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DYRK4 dual specificity tyrosine phosphorylation regulated kinase 4 [ Homo sapiens (human) ]

Gene ID: 8798, updated on 5-Mar-2024

Summary

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Official Symbol
DYRK4provided by HGNC
Official Full Name
dual specificity tyrosine phosphorylation regulated kinase 4provided by HGNC
Primary source
HGNC:HGNC:3095
See related
Ensembl:ENSG00000010219 MIM:609181; AllianceGenome:HGNC:3095
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene encodes an enzyme that belongs to a conserved family of serine/threonine protein kinases. Members of this dual specificity kinase family are thought to function in the regulation of cell differentiation and proliferation, survival, and in development. Alternate splicing results in multiple transcript variants. Additional alternatively spliced transcript variants of this gene have been described, but their full-length nature is not known. [provided by RefSeq, Aug 2013]
Expression
Broad expression in testis (RPKM 18.7), thyroid (RPKM 5.2) and 23 other tissues See more
Orthologs
mouse all
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Genomic context

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See DYRK4 in Genome Data Viewer
Location:
12p13.32
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (4562208..4613875)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (4568995..4620692)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (4671374..4723041)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene FERRY endosomal RAB5 effector complex subunit 3 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:4618390-4619024 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5825 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:4647270-4647879 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:4647880-4648488 Neighboring gene RAD51 associated protein 1 Neighboring gene Sharpr-MPRA regulatory region 10040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5826 Neighboring gene coiled-coil domain containing 181 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5827 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:4737023-4738222 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:4739222-4740085 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:4742144-4742644 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:4742645-4743145 Neighboring gene RAB5A, member RAS oncogene family pseudogene Neighboring gene A-kinase anchoring protein 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5828 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:4758050-4758705 Neighboring gene NADH:ubiquinone oxidoreductase subunit A9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. A Novel Neoplastic Fusion Transcript, RAD51AP1-DYRK4, Confers Sensitivity to the MEK Inhibitor Trametinib in Aggressive Breast Cancers. Liu CC, et al. Clin Cancer Res, 2021 Feb 1. PMID 33172895, Free PMC Article
  2. Splice variants of the dual specificity tyrosine phosphorylation-regulated kinase 4 (DYRK4) differ in their subcellular localization and catalytic activity. Papadopoulos C, et al. J Biol Chem, 2011 Feb 18. PMID 21127067, Free PMC Article
  3. The expression of the testis-specific Dyrk4 kinase is highly restricted to step 8 spermatids but is not required for male fertility in mice. Sacher F, et al. Mol Cell Endocrinol, 2007 Mar 15. PMID 17292540
  4. DYRK gene structure and erythroid-restricted features of DYRK3 gene expression. Zhang D, et al. Genomics, 2005 Jan. PMID 15607427
  5. Sequence characteristics, subcellular localization, and substrate specificity of DYRK-related kinases, a novel family of dual specificity protein kinases. Becker W, et al. J Biol Chem, 1998 Oct 2. PMID 9748265

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A Novel Neoplastic Fusion Transcript, RAD51AP1-DYRK4, Confers Sensitivity to the MEK Inhibitor Trametinib in Aggressive Breast Cancers.
    Title: A Novel Neoplastic Fusion Transcript, RAD51AP1-DYRK4, Confers Sensitivity to the MEK Inhibitor Trametinib in Aggressive Breast Cancers.
  2. DYRK4 isoforms resulting from alternative splicing differ in subcellular localization and catalytic activity
    Title: Splice variants of the dual specificity tyrosine phosphorylation-regulated kinase 4 (DYRK4) differ in their subcellular localization and catalytic activity.
  3. Dyrk4 is a testis-specific kinase with a very restricted expression to stage VIII postmeiotic spermatids.
    Title: The expression of the testis-specific Dyrk4 kinase is highly restricted to step 8 spermatids but is not required for male fertility in mice.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Integrated Genome-wide Association, Coexpression Network, and Expression Single Nucleotide Polymorphism Analysis Identifies Novel Pathway in Allergic Rhinitis.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Potential readthrough

Included gene: NDUFA9

Homology

Clone Names

  • FLJ18618

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein serine/threonine/tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein tyrosine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in peptidyl-serine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in peptidyl-threonine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
dual specificity tyrosine-phosphorylation-regulated kinase 4
Names
dual specificity tyrosine-(Y)-phosphorylation regulated kinase 4
NP_001269214.1
NP_001269215.1
NP_001358230.1
NP_001381708.1
NP_001381709.1
NP_001393948.1
NP_003836.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282285.3 → NP_001269214.1  dual specificity tyrosine-phosphorylation-regulated kinase 4 isoform 2

    Status: REVIEWED

    Source sequence(s)
    AC005832
    UniProtKB/TrEMBL
    D3JEN3
    Conserved Domains (1) summary
    cl21453
    Location:1 → 114
    PKc_like; Protein Kinases, catalytic domain

  2. NM_001282286.2 → NP_001269215.1  dual specificity tyrosine-phosphorylation-regulated kinase 4 isoform 3

    See identical proteins and their annotated locations for NP_001269215.1

    Status: REVIEWED

    Source sequence(s)
    AC005832
    UniProtKB/TrEMBL
    B4E1A4, D3JEN3
    Related
    ENST00000545571.5
    Conserved Domains (1) summary
    cl21453
    Location:1 → 114
    PKc_like; Protein Kinases, catalytic domain

  3. NM_001371301.2 → NP_001358230.1  dual specificity tyrosine-phosphorylation-regulated kinase 4 isoform 4

    Status: REVIEWED

    Source sequence(s)
    AC005832
    Conserved Domains (1) summary
    cd14225
    Location:175 → 515
    PKc_DYRK4; Catalytic domain of the protein kinase, Dual-specificity tYrosine-phosphorylated and -Regulated Kinase 4

  4. NM_001394779.1 → NP_001381708.1  dual specificity tyrosine-phosphorylation-regulated kinase 4 isoform 5

    Status: REVIEWED

    Source sequence(s)
    AC005832
    Consensus CDS
    CCDS91641.1
    UniProtKB/TrEMBL
    A0A0A0MTH5
    Related
    ENSP00000439697.2, ENST00000543431.6
    Conserved Domains (1) summary
    cd14225
    Location:175 → 515
    PKc_DYRK4; Catalytic domain of the protein kinase, Dual-specificity tYrosine-phosphorylated and -Regulated Kinase 4

  5. NM_001394780.1 → NP_001381709.1  dual specificity tyrosine-phosphorylation-regulated kinase 4 isoform 6

    Status: REVIEWED

    Source sequence(s)
    AC005832
    Conserved Domains (1) summary
    cd14225
    Location:169 → 509
    PKc_DYRK4; Catalytic domain of the protein kinase, Dual-specificity tYrosine-phosphorylated and -Regulated Kinase 4

  6. NM_001407019.1 → NP_001393948.1  dual specificity tyrosine-phosphorylation-regulated kinase 4 isoform 1

    Status: REVIEWED

    Source sequence(s)
    AC005832
    UniProtKB/Swiss-Prot
    A8K8F7, Q8NEF2, Q92631, Q9NR20

  7. NM_003845.3 → NP_003836.1  dual specificity tyrosine-phosphorylation-regulated kinase 4 isoform 1

    See identical proteins and their annotated locations for NP_003836.1

    Status: REVIEWED

    Source sequence(s)
    AC005832
    Consensus CDS
    CCDS8530.1
    UniProtKB/Swiss-Prot
    A8K8F7, Q8NEF2, Q92631, Q9NR20
    Related
    ENSP00000441755.1, ENST00000540757.6
    Conserved Domains (1) summary
    cd14225
    Location:60 → 400
    PKc_DYRK4; Catalytic domain of the protein kinase, Dual-specificity tYrosine-phosphorylated and -Regulated Kinase 4

RNA

  1. NR_104115.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) uses alternate splice sites in three exons and contains a 3' terminal exon that extends past a splice site that is used in variant 1. This variant is represented as non-coding because the use of the 5'-most translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC005832, DB082653, GU139746
    Related
    ENST00000536157.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    4562208..4613875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    4568995..4620692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9NR20.2 GenPept UniProtKB/Swiss-Prot:Q9NR20

Gene LinkOut

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