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ANP32E acidic nuclear phosphoprotein 32 family member E [ Homo sapiens (human) ]

Gene ID: 81611, updated on 23-Mar-2024

Summary

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Official Symbol
ANP32Eprovided by HGNC
Official Full Name
acidic nuclear phosphoprotein 32 family member Eprovided by HGNC
Primary source
HGNC:HGNC:16673
See related
Ensembl:ENSG00000143401 MIM:609611; AllianceGenome:HGNC:16673
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LANPL; LANP-L
Summary
Enables histone binding activity. Involved in histone exchange. Located in nucleus. Part of Swr1 complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in lymph node (RPKM 31.5), bone marrow (RPKM 21.4) and 24 other tissues See more
Orthologs
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Genomic context

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See ANP32E in Genome Data Viewer
Location:
1q21.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (150218417..150236112, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (149343213..149361083, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (150190717..150208460, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1297 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1298 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1671 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1672 Neighboring gene long intergenic non-protein coding RNA 2988 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1673 Neighboring gene Sharpr-MPRA regulatory region 9169 Neighboring gene CRISPRi-validated cis-regulatory element chr1.8432 Neighboring gene RNA, 7SL, cytoplasmic 480, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1674 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1675 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1299 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1676 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:150208844-150209411 Neighboring gene RNA, U2 small nuclear 17, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:150228359-150229053 Neighboring gene small nucleolar RNA, C/D box 13C Neighboring gene carbonic anhydrase 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Subtype-Independent ANP32E Reduction During Breast Cancer Progression in Accordance with Chromatin Relaxation. Ruff GL, et al. BMC Cancer, 2021 Dec 18. PMID 34922480, Free PMC Article
  2. Over-expression of ANP32E is associated with poor prognosis of pancreatic cancer and promotes cell proliferation and migration through regulating β-catenin. Zhang J, et al. BMC Cancer, 2020 Nov 4. PMID 33148205, Free PMC Article
  3. Up-regulated ANP32E promotes the thyroid carcinoma cell proliferation and migration via activating AKT/mTOR/HK2-mediated glycolysis. Huang J, et al. Gene, 2020 Aug 5. PMID 32304784
  4. ANP32E, a Protein Involved in Steroid-Refractoriness in Ulcerative Colitis, Identified by a Systems Biology Approach. Lorén V, et al. J Crohns Colitis, 2019 Mar 26. PMID 30329026
  5. Molecular cloning and characterization of a novel human gene (ANP32E alias LANPL) from human fetal brain. Jiang M, et al. Cytogenet Genome Res, 2002. PMID 12438741

See all (88) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ANP32e Binds Histone H2A.Z in a Cell Cycle-Dependent Manner and Regulates Its Protein Stability in the Cytoplasm.
    Title: ANP32e Binds Histone H2A.Z in a Cell Cycle-Dependent Manner and Regulates Its Protein Stability in the Cytoplasm.
  2. An Influenza A virus can evolve to use human ANP32E through altering polymerase dimerization.
    Title: An Influenza A virus can evolve to use human ANP32E through altering polymerase dimerization.
  3. ANP32E contributes to gastric cancer progression via NUF2 upregulation.
    Title: ANP32E contributes to gastric cancer progression via NUF2 upregulation.
  4. Subtype-Independent ANP32E Reduction During Breast Cancer Progression in Accordance with Chromatin Relaxation.
    Title: Subtype-Independent ANP32E Reduction During Breast Cancer Progression in Accordance with Chromatin Relaxation.
  5. Hsa-let-7c exerts an anti-tumor function by negatively regulating ANP32E in lung adenocarcinoma.
    Title: Hsa-let-7c exerts an anti-tumor function by negatively regulating ANP32E in lung adenocarcinoma.
  6. Over-expression of ANP32E is associated with poor prognosis of pancreatic cancer and promotes cell proliferation and migration through regulating beta-catenin.
    Title: Over-expression of ANP32E is associated with poor prognosis of pancreatic cancer and promotes cell proliferation and migration through regulating β-catenin.
  7. Findings suggest that ANP32E promotes THCA cell proliferation and migration via potentiating AKT/mTOR/HK2-mediated glycolysis.
    Title: Up-regulated ANP32E promotes the thyroid carcinoma cell proliferation and migration via activating AKT/mTOR/HK2-mediated glycolysis.
  8. A systems biology approach allowed us to identify a comprehensive mechanism of action of steroid-refractoriness, highlighting the key role of steroid-induced transcription and the potential implication of ANP32E in this phenomenon.
    Title: ANP32E, a Protein Involved in Steroid-Refractoriness in Ulcerative Colitis, Identified by a Systems Biology Approach.
  9. ANP32E is an efficient prognostic marker, and it promotes the G1/S transition and induces tumorigenesis of Triple-negative breast cancer cells by transcriptionally inducing E2F1.
    Title: ANP32E induces tumorigenesis of triple-negative breast cancer cells by upregulating E2F1.
  10. Study identified ANP32E as one of the miR-141 targets, and demonstrated its involvement in the regulation of cell proliferation, migration, and invasion of breast cancer cells.
    Title: Downregulation of miRNA-141 in breast cancer cells is associated with cell migration and invasion: involvement of ANP32E targeting.
Submit: New GeneRIF Correction See all GeneRIFs (14)

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Biological insights from 108 schizophrenia-associated genetic loci.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
Rev rev HIV-1 Rev interacting protein, acidic leucine-rich nuclear phosphoprotein 32 E (ANP32E), is identified by the in-vitro binding experiments involving cytosolic or nuclear extracts from HeLa cells. The interaction of Rev with ANP32E is decreased by RRE PubMed
retropepsin gag-pol Positional proteomics analysis identifies the cleavage of human acidic (leucine-rich) nuclear phosphoprotein 32 family, member E (ANP32E) at amino acid residues 235-236 by the HIV-1 protease PubMed

Go to the HIV-1, Human Interaction Database

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC5350

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables histone binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables histone chaperone activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphatase inhibitor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphatase inhibitor activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein folding chaperone EXP
Inferred from Experiment
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
  
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of apoptotic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of Swr1 complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasmic vesicle ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
acidic leucine-rich nuclear phosphoprotein 32 family member E
Names
LANP-like protein
acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
leucine-rich acidic nuclear protein like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136478.4 → NP_001129950.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AC242988
    Consensus CDS
    CCDS44214.1
    UniProtKB/Swiss-Prot
    Q9BTT0
    Related
    ENSP00000393718.2, ENST00000436748.6

  2. NM_001136479.3 → NP_001129951.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform 3

    See identical proteins and their annotated locations for NP_001129951.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and initiates translation at a downstream start codon compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AC242988
    Consensus CDS
    CCDS44215.1
    UniProtKB/Swiss-Prot
    Q9BTT0
    Related
    ENSP00000481415.1, ENST00000616917.4
    Conserved Domains (2) summary
    sd00033
    Location:18 → 41
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:5 → 98
    LRR_9; Leucine-rich repeat

  3. NM_001280559.2 → NP_001267488.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform 4

    See identical proteins and their annotated locations for NP_001267488.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has an alternate splice site in the 3' coding region compared to variant 1. The resulting isoform (4) lacks an internal aa compared to isoform 1.
    Source sequence(s)
    AC242988
    UniProtKB/Swiss-Prot
    Q9BTT0
    Conserved Domains (2) summary
    sd00033
    Location:44 → 65
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:34 → 146
    LRR_9; Leucine-rich repeat

  4. NM_001280560.2 → NP_001267489.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks two internal exons compared to variant 1. The resulting isoform (5) is shorter and has a distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC242988
    Consensus CDS
    CCDS60245.1
    UniProtKB/TrEMBL
    B4E0D5, E9PLC4
    Related
    ENSP00000435215.1, ENST00000533654.5
    Conserved Domains (2) summary
    sd00033
    Location:44 → 65
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:65 → 107
    LRR_4; Leucine Rich repeats (2 copies)

  5. NM_030920.5 → NP_112182.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform 1

    See identical proteins and their annotated locations for NP_112182.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC242988
    Consensus CDS
    CCDS946.1
    UniProtKB/Swiss-Prot
    B4E0I6, E9PEA6, Q5TB18, Q5TB20, Q8N1S4, Q8WWW9, Q9BTT0
    Related
    ENSP00000463154.1, ENST00000583931.6
    Conserved Domains (2) summary
    sd00033
    Location:44 → 65
    LRR_RI; leucine-rich repeat [structural motif]
    pfam14580
    Location:34 → 146
    LRR_9; Leucine-rich repeat

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    150218417..150236112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005245514.5 → XP_005245571.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X3

    See identical proteins and their annotated locations for XP_005245571.1

    Conserved Domains (4) summary
    cd00116
    Location:15 → 146
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:44 → 65
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:88 → 130
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:65 → 125
    LRR_8; Leucine rich repeat

  2. XM_017002418.3 → XP_016857907.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X2

  3. XM_005245513.5 → XP_005245570.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X1

    Conserved Domains (3) summary
    cd09293
    Location:53 → 126
    AMN1; Antagonist of mitotic exit network protein 1
    sd00033
    Location:44 → 65
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:65 → 125
    LRR_8; Leucine rich repeat

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    149343213..149361083 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054338923.1 → XP_054194898.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X3

  2. XM_054338921.1 → XP_054194896.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X1

  3. XM_054338922.1 → XP_054194897.1  acidic leucine-rich nuclear phosphoprotein 32 family member E isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9BTT0.1 GenPept UniProtKB/Swiss-Prot:Q9BTT0

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