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CSPP1 centrosome and spindle pole associated protein 1 [ Homo sapiens (human) ]

Gene ID: 79848, updated on 7-Apr-2024

Summary

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Official Symbol
CSPP1provided by HGNC
Official Full Name
centrosome and spindle pole associated protein 1provided by HGNC
Primary source
HGNC:HGNC:26193
See related
Ensembl:ENSG00000104218 MIM:611654; AllianceGenome:HGNC:26193
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CSPP; CSPP-L; JBTS21
Summary
This gene encodes a centrosome and spindle pole associated protein. The encoded protein plays a role in cell-cycle progression and spindle organization, regulates cytokinesis, interacts with Nephrocystin 8 and is required for cilia formation. Mutations in this gene result in primary cilia abnormalities and classical Joubert syndrome. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Apr 2014]
Expression
Broad expression in testis (RPKM 7.4), kidney (RPKM 3.8) and 25 other tissues See more
Orthologs
mouse all
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Genomic context

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Location:
8q13.1-q13.2
Exon count:
37
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (67064368..67196614)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (67488869..67623074)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (67976603..68108849)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375885 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27494 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27495 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:67976583-67976770 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:68012735-68012945 Neighboring gene COP9 signalosome subunit 5 Neighboring gene RNA, 5S ribosomal pseudogene 268 Neighboring gene uncharacterized LOC124901956 Neighboring gene ADP ribosylation factor guanine nucleotide exchange factor 1 Neighboring gene nucleophosmin 1 pseudogene 44 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:68153855-68154652 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:68221915-68222570 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:68222571-68223225 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:68255030-68255710 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19262 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:68261316-68261816 Neighboring gene ARFGEF1 divergent transcript Neighboring gene Sharpr-MPRA regulatory region 12286 Neighboring gene CRISPRi-validated cis-regulatory element chr8.1934 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:68280925-68281630 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:68281631-68282336 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:68293145-68293756 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27496 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27497 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27499 Neighboring gene ribosomal protein L17 pseudogene 31 Neighboring gene carboxypeptidase A6 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:68424545-68425147 Neighboring gene uncharacterized LOC105375886 Neighboring gene NACA pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. CSPP1 stabilizes growing microtubule ends and damaged lattices from the luminal side. van den Berg CM, et al. J Cell Biol, 2023 Apr 3. PMID 36752787, Free PMC Article
  2. Roles of circ-CSPP1 on the proliferation and metastasis of glioma cancer. Xue YF, et al. Eur Rev Med Pharmacol Sci, 2020 May. PMID 32495924
  3. CSPP-L Associates with the Desmosome of Polarized Epithelial Cells and Is Required for Normal Spheroid Formation. Sternemalm J, et al. PLoS One, 2015. PMID 26241740, Free PMC Article
  4. Nuclear CSPP1 expression defined subtypes of basal-like breast cancer. Sternemalm J, et al. Br J Cancer, 2014 Jul 15. PMID 24901235, Free PMC Article
  5. Mutations in CSPP1 lead to classical Joubert syndrome. Akizu N, et al. Am J Hum Genet, 2014 Jan 2. PMID 24360807, Free PMC Article

See all (47) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CSPP1 stabilizes growing microtubule ends and damaged lattices from the luminal side.
    Title: CSPP1 stabilizes growing microtubule ends and damaged lattices from the luminal side.
  2. Circle RNA circCSPP1 promotes human osteosarcoma cell proliferation and increases glucose metabolism by suppressing miR-200c maturation.
    Title: Circle RNA circCSPP1 promotes human osteosarcoma cell proliferation and increases glucose metabolism by suppressing miR-200c maturation.
  3. Roles of circ-CSPP1 on the proliferation and metastasis of glioma cancer.
    Title: Roles of circ-CSPP1 on the proliferation and metastasis of glioma cancer.
  4. Tumor-promoting effect was inhibited after we transfected miR-1236-3p into circ-CSPP1 overexpressing OC cells.
    Title: circ-CSPP1 promotes proliferation, invasion and migration of ovarian cancer cells by acting as a miR-1236-3p sponge.
  5. Microtubule-independent but desmoplakin-dependent localization of CSPP-L to desmosomes occurs in apical-basal polarized epithelial cells. CSPP-L depletion promoted multi-lumen spheroid formation in Caco-2 cells.
    Title: CSPP-L Associates with the Desmosome of Polarized Epithelial Cells and Is Required for Normal Spheroid Formation.
  6. propose that CSPP1 cooperates with CENP-H on kinetochores to serve as a novel regulator of kinetochore microtubule dynamics for accurate chromosome segregation
    Title: Mitotic Protein CSPP1 Interacts with CENP-H Protein to Coordinate Accurate Chromosome Oscillation in Mitosis.
  7. Differential expression of a nuclear CSPP1 isoform identified biologically and clinically distinct subgroups of basal-like breast carcinoma.
    Title: Nuclear CSPP1 expression defined subtypes of basal-like breast cancer.
  8. CSPP1 mutations are a major cause of the Joubert-Jeune phenotype in humans.
    Title: Mutations in CSPP1 cause primary cilia abnormalities and Joubert syndrome with or without Jeune asphyxiating thoracic dystrophy.
  9. Our data suggest that CSPP1 is required for proper primary cilium formation or stability and that CSPP1 mutations result in abnormal mid-hindbrain development.
    Title: Mutations in CSPP1 lead to classical Joubert syndrome.
  10. mutations in CSPP1 were associated with variable ciliopathy phenotypes ranging from Joubert syndrome to the more severe Meckel-Gruber syndrome with perinatal lethality and occipital encephalocele
    Title: Mutations in CSPP1, encoding a core centrosomal protein, cause a range of ciliopathy phenotypes in humans.
Submit: New GeneRIF Correction See all GeneRIFs (14)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
Joubert syndrome 21
MedGen: C3810212 OMIM: 615636 GeneReviews: Joubert Syndrome
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Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Replication interactions

Interaction Pubs
Knockdown of centrosome and spindle pole associated protein 1 (CSPP1) by siRNA inhibits HIV-1 replication in HeLa-derived TZM-bl cells PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ22490, FLJ38886

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of cell division IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of cytokinesis IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of cytokinesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in centriolar satellite IDA
Inferred from Direct Assay
more info
  
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in centrosome IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in spindle IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in spindle pole IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in spindle pole IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
centrosome and spindle pole-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_034100.1 RefSeqGene

    Range
    5025..137247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001291339.2 → NP_001278268.1  centrosome and spindle pole-associated protein 1 isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) contains a distinct 5' UTR, and lacks an in-frame portion of the 5' coding region and an internal in-frame exon, compared to variant 1. The resulting isoform (2, also known as CSPP) has a shorter N-terminus and lacks an internal segment, compared to isoform 1.
    Source sequence(s)
    AJ583433, AK026143, AK308372, AM156947, CA447290, DB030075
    Consensus CDS
    CCDS78344.1
    UniProtKB/TrEMBL
    A0A7I2V5P5
    Related
    ENSP00000430092.1, ENST00000519668.1

  2. NM_001363131.2 → NP_001350060.1  centrosome and spindle pole-associated protein 1 isoform 3

    Status: REVIEWED

    Source sequence(s)
    AC087359, AC109335, CA447290, DA177690
    Consensus CDS
    CCDS94309.1
    UniProtKB/TrEMBL
    A0A6Q8PF96, A0A7I2V4L2
    Related
    ENSP00000501676.1, ENST00000675955.1

  3. NM_001363132.2 → NP_001350061.1  centrosome and spindle pole-associated protein 1 isoform 4

    Status: REVIEWED

    Source sequence(s)
    AM156947, BG698003, BM555375, BX649147, CA447290, DB046430, DW426634, HY040643
    Consensus CDS
    CCDS94308.1
    UniProtKB/TrEMBL
    A0A6Q8PF61, A0A6Q8PHN8
    Related
    ENSP00000502747.1, ENST00000675869.1

  4. NM_001363133.2 → NP_001350062.1  centrosome and spindle pole-associated protein 1 isoform 5

    Status: REVIEWED

    Source sequence(s)
    AC087359, BG698003, BM555375, CA447290, DA177690
    Consensus CDS
    CCDS94310.1
    UniProtKB/TrEMBL
    A0A6Q8PGS3, A0A7I2V3M9
    Related
    ENSP00000502421.1, ENST00000675306.2

  5. NM_001364869.1 → NP_001351798.1  centrosome and spindle pole-associated protein 1 isoform 6

    Status: REVIEWED

    Source sequence(s)
    AC087359, AC109335
    Consensus CDS
    CCDS94301.1
    UniProtKB/TrEMBL
    A0A7I2PHE7, A0A7I2V372
    Related
    ENSP00000262210.6, ENST00000262210.11

  6. NM_001364870.1 → NP_001351799.1  centrosome and spindle pole-associated protein 1 isoform 7

    Status: REVIEWED

    Source sequence(s)
    AC087359, AC109335
    Consensus CDS
    CCDS94304.1
    UniProtKB/TrEMBL
    A0A7I2V372, A0A7I2V5L8
    Related
    ENSP00000504342.1, ENST00000676882.1

  7. NM_001382391.1 → NP_001369320.1  centrosome and spindle pole-associated protein 1 isoform 8

    Status: REVIEWED

    Source sequence(s)
    AC087359, AC109335
    Consensus CDS
    CCDS94307.1
    UniProtKB/TrEMBL
    A0A6Q8PF61, A0A7I2V5W3
    Related
    ENSP00000504733.1, ENST00000678616.1

  8. NM_024790.6 → NP_079066.5  centrosome and spindle pole-associated protein 1 isoform 1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1, also known as CSPP-L).
    Source sequence(s)
    AM156947, BX649147, CA447290
    Consensus CDS
    CCDS43744.1
    UniProtKB/TrEMBL
    A0A7I2V372
    Related
    ENSP00000502047.1, ENST00000676317.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    67064368..67196614
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011517598.3 → XP_011515900.2  centrosome and spindle pole-associated protein 1 isoform X1

  2. XM_047422253.1 → XP_047278209.1  centrosome and spindle pole-associated protein 1 isoform X16

  3. XM_047422245.1 → XP_047278201.1  centrosome and spindle pole-associated protein 1 isoform X7

  4. XM_047422257.1 → XP_047278213.1  centrosome and spindle pole-associated protein 1 isoform X20

  5. XM_005251305.5 → XP_005251362.3  centrosome and spindle pole-associated protein 1 isoform X3

    UniProtKB/Swiss-Prot
    A6ND63, Q1MSJ5, Q70F00, Q8TBC1
    Related
    ENSP00000502454.1, ENST00000674993.1

  6. XM_047422254.1 → XP_047278210.1  centrosome and spindle pole-associated protein 1 isoform X17

  7. XM_006716474.4 → XP_006716537.3  centrosome and spindle pole-associated protein 1 isoform X9

  8. XM_047422244.1 → XP_047278200.1  centrosome and spindle pole-associated protein 1 isoform X4

  9. XM_017013847.3 → XP_016869336.2  centrosome and spindle pole-associated protein 1 isoform X6

  10. XM_006716477.4 → XP_006716540.3  centrosome and spindle pole-associated protein 1 isoform X21

  11. XM_011517599.3 → XP_011515901.2  centrosome and spindle pole-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A7I2V4R5
    Related
    ENSP00000503878.1, ENST00000678542.1

  12. XM_047422249.1 → XP_047278205.1  centrosome and spindle pole-associated protein 1 isoform X12

  13. XM_047422246.1 → XP_047278202.1  centrosome and spindle pole-associated protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A7I2V5N5
    Related
    ENSP00000504516.1, ENST00000677592.1

  14. XM_017013854.3 → XP_016869343.2  centrosome and spindle pole-associated protein 1 isoform X22

    UniProtKB/TrEMBL
    A0A7I2YQH9
    Related
    ENSP00000503690.1, ENST00000678318.1

  15. XM_047422260.1 → XP_047278216.1  centrosome and spindle pole-associated protein 1 isoform X25

  16. XM_011517601.3 → XP_011515903.2  centrosome and spindle pole-associated protein 1 isoform X5

  17. XM_047422256.1 → XP_047278212.1  centrosome and spindle pole-associated protein 1 isoform X19

    Related
    ENSP00000503297.1, ENST00000677009.1

  18. XM_047422252.1 → XP_047278208.1  centrosome and spindle pole-associated protein 1 isoform X15

  19. XM_017013849.3 → XP_016869338.2  centrosome and spindle pole-associated protein 1 isoform X10

  20. XM_047422255.1 → XP_047278211.1  centrosome and spindle pole-associated protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A7I2V3Z9
    Related
    ENSP00000503711.1, ENST00000676471.1

  21. XM_047422259.1 → XP_047278215.1  centrosome and spindle pole-associated protein 1 isoform X24

    Related
    ENSP00000504522.1, ENST00000677619.1

  22. XM_047422261.1 → XP_047278217.1  centrosome and spindle pole-associated protein 1 isoform X26

    UniProtKB/TrEMBL
    A0A7I2V5J9
    Related
    ENSP00000504532.1, ENST00000676573.1

  23. XM_047422250.1 → XP_047278206.1  centrosome and spindle pole-associated protein 1 isoform X13

  24. XM_047422247.1 → XP_047278203.1  centrosome and spindle pole-associated protein 1 isoform X11

  25. XM_047422258.1 → XP_047278214.1  centrosome and spindle pole-associated protein 1 isoform X23

  26. XM_047422251.1 → XP_047278207.1  centrosome and spindle pole-associated protein 1 isoform X14

  27. XM_047422262.1 → XP_047278218.1  centrosome and spindle pole-associated protein 1 isoform X27

  28. XM_011517611.4 → XP_011515913.1  centrosome and spindle pole-associated protein 1 isoform X28

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    67488869..67623074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054361254.1 → XP_054217229.1  centrosome and spindle pole-associated protein 1 isoform X32

  2. XM_054361267.1 → XP_054217242.1  centrosome and spindle pole-associated protein 1 isoform X35

  3. XM_054361263.1 → XP_054217238.1  centrosome and spindle pole-associated protein 1 isoform X34

  4. XM_054361250.1 → XP_054217225.1  centrosome and spindle pole-associated protein 1 isoform X30

  5. XM_054361260.1 → XP_054217235.1  centrosome and spindle pole-associated protein 1 isoform X33

  6. XM_054361247.1 → XP_054217222.1  centrosome and spindle pole-associated protein 1 isoform X29

  7. XM_054361252.1 → XP_054217227.1  centrosome and spindle pole-associated protein 1 isoform X31

  8. XM_054361264.1 → XP_054217239.1  centrosome and spindle pole-associated protein 1 isoform X16

  9. XM_054361255.1 → XP_054217230.1  centrosome and spindle pole-associated protein 1 isoform X7

  10. XM_054361268.1 → XP_054217243.1  centrosome and spindle pole-associated protein 1 isoform X20

  11. XM_054361249.1 → XP_054217224.1  centrosome and spindle pole-associated protein 1 isoform X3

  12. XM_054361265.1 → XP_054217240.1  centrosome and spindle pole-associated protein 1 isoform X17

  13. XM_054361257.1 → XP_054217232.1  centrosome and spindle pole-associated protein 1 isoform X9

  14. XM_054361251.1 → XP_054217226.1  centrosome and spindle pole-associated protein 1 isoform X4

  15. XM_054361253.1 → XP_054217228.1  centrosome and spindle pole-associated protein 1 isoform X6

  16. XM_054361269.1 → XP_054217244.1  centrosome and spindle pole-associated protein 1 isoform X21

  17. XM_054361248.1 → XP_054217223.1  centrosome and spindle pole-associated protein 1 isoform X2

  18. XM_054361256.1 → XP_054217231.1  centrosome and spindle pole-associated protein 1 isoform X8

  19. XM_054361270.1 → XP_054217245.1  centrosome and spindle pole-associated protein 1 isoform X22

  20. XM_054361273.1 → XP_054217248.1  centrosome and spindle pole-associated protein 1 isoform X25

  21. XM_054361258.1 → XP_054217233.1  centrosome and spindle pole-associated protein 1 isoform X10

  22. XM_054361266.1 → XP_054217241.1  centrosome and spindle pole-associated protein 1 isoform X18

  23. XM_054361272.1 → XP_054217247.1  centrosome and spindle pole-associated protein 1 isoform X24

  24. XM_054361274.1 → XP_054217249.1  centrosome and spindle pole-associated protein 1 isoform X26

  25. XM_054361261.1 → XP_054217236.1  centrosome and spindle pole-associated protein 1 isoform X13

  26. XM_054361259.1 → XP_054217234.1  centrosome and spindle pole-associated protein 1 isoform X11

  27. XM_054361271.1 → XP_054217246.1  centrosome and spindle pole-associated protein 1 isoform X23

  28. XM_054361262.1 → XP_054217237.1  centrosome and spindle pole-associated protein 1 isoform X14

  29. XM_054361275.1 → XP_054217250.1  centrosome and spindle pole-associated protein 1 isoform X27

  30. XM_054361276.1 → XP_054217251.1  centrosome and spindle pole-associated protein 1 isoform X28

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001077204.1: Suppressed sequence

    Description
    NM_001077204.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1MSJ5.4 GenPept UniProtKB/Swiss-Prot:Q1MSJ5

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