C1orf115 chromosome 1 open reading frame 115 [Homo sapiens (human)] - Gene

Summary

Official Symbol: C1orf115provided by HGNC
Official Full Name: chromosome 1 open reading frame 115provided by HGNC
Primary source: HGNC:HGNC:25873
See related: Ensembl:ENSG00000162817 AllianceGenome:HGNC:25873
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: RDD1
Summary: Located in 9+0 non-motile cilium. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Broad expression in small intestine (RPKM 62.0), duodenum (RPKM 56.9) and 23 other tissues See more
Orthologs: mouse all
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Genomic context

Location:: 1q41

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	1	NC_000001.11 (220690363..220699153)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	1	NC_060925.1 (219930068..219938857)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	1	NC_000001.10 (220863705..220872495)

Chromosome 1 - NC_000001.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Systematic functional identification of cancer multi-drug resistance genes.
Title: Systematic functional identification of cancer multi-drug resistance genes.

Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

HSC21A072 (e-PCR)
- UniSTS:16249

A004A32 (e-PCR)
- UniSTS:44762

SHGC-17189 (e-PCR)
- UniSTS:67324

Gene Ontology Provided by GOA

Process	Evidence Code	Pubs
involved_in regulation of response to drug	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in 9+0 non-motile cilium	IDA Inferred from Direct Assay more info	PubMed
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: required for drug-induced death protein 1

Names: Required for Drug-induced Death 1; uncharacterized protein C1orf115

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.