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TRP-AGG2-5 tRNA-Pro (anticodon AGG) 2-5 [ Homo sapiens (human) ]

Gene ID: 7217, updated on 10-Oct-2023

Summary

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Official Symbol
TRP-AGG2-5provided by HGNC
Official Full Name
tRNA-Pro (anticodon AGG) 2-5provided by HGNC
Primary source
HGNC:HGNC:12330
See related
MIM:189930; AllianceGenome:HGNC:12330
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRP1; TRNP1; TRNAP1; TRP-AGG2-3
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Genomic context

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See TRP-AGG2-5 in Genome Data Viewer
Location:
14q11.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (20609336..20609407, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (14806450..14806521, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (21077495..21077566, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:21027647-21028226 Neighboring gene ribonuclease A family member 9 (inactive) Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:21046340-21047110 Neighboring gene ribonuclease A family member 11 (inactive) Neighboring gene RNASE11 and RNASE12 antisense RNA 1 Neighboring gene ribonuclease A family member 12 (inactive) Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5567 Neighboring gene uncharacterized LOC124903280 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5568 Neighboring gene tRNA-Leu (anticodon AAG) 2-3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8081 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5569 Neighboring gene tRNA-Pro (anticodon AGG) 2-6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mitochondrial DNA polymorphisms in bipolar disorder. Kato T, et al. J Affect Disord, 2001 Feb. PMID 11223103
  2. Seven unidentified reading frames of human mitochondrial DNA encode subunits of the respiratory chain NADH dehydrogenase. Attardi G, et al. Cold Spring Harb Symp Quant Biol, 1986. PMID 3472707
  3. Differentiation of HT-29 human colonic adenocarcinoma cells correlates with increased expression of mitochondrial RNA: effects of trehalose on cell growth and maturation. Lu X, et al. Cancer Res, 1992 Jul 1. PMID 1377597
  4. Dinucleotide repeat in the human mitochondrial D-loop. Bodenteich A, et al. Hum Mol Genet, 1992 May. PMID 1301157
  5. Nucleotide sequence and transcription of a human tRNA gene cluster with four genes. Chang YN, et al. Gene, 1986. PMID 3557125

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Observational study of gene-disease association. (HuGE Navigator)
    Title: Mitochondrial DNA polymorphisms in bipolar disorder.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA proline 1 (anticodon AGG)
  • tRNA-Pro-AGG-2-3
  • tRNA-Pro-AGG-2-5
  • transfer RNA proline 1 (anticodon AGG)
  • transfer RNA-Pro (AGG) 2-3
  • transfer RNA-Pro (AGG) 2-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    20609336..20609407 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    14806450..14806521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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