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TARBP2P1 TARBP2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 6896, updated on 10-Oct-2023

Summary

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Official Symbol
TARBP2P1provided by HGNC
Official Full Name
TARBP2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:11570
See related
AllianceGenome:HGNC:11570
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRBP; TARBP2P
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Genomic context

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Location:
8q22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (103659244..103660588)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (104786841..104788185)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (104671472..104672816)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr8:104577723-104577885 Neighboring gene mediator complex subunit 21 pseudogene Neighboring gene regulating synaptic membrane exocytosis 2 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:104620341-104620931 Neighboring gene prothymosin alpha pseudogene 15 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:104636023-104636786 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:104638899-104639435 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:104658118-104658714 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:104663069-104663834 Neighboring gene small nucleolar RNA U13 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:104687894-104688721 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:104688722-104689548 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:104719477-104719978 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:104719979-104720478 Neighboring gene ribosomal protein S6 pseudogene 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of TRBP1 and TRBP2. Stable stem-loop structure at the 5' end of TRBP2 mRNA resembles HIV-1 TAR and is not found in its processed pseudogene. Duarte M, et al. J Biomed Sci, 2000 Nov-Dec. PMID 11060498
  2. Characterization of a human TAR RNA-binding protein that activates the HIV-1 LTR. Gatignol A, et al. Science, 1991 Mar 29. PMID 2011739
  3. Genetic mapping in human and mouse of the locus encoding TRBP, a protein that binds the TAR region of the human immunodeficiency virus (HIV-1). Kozak CA, et al. Genomics, 1995 Jan 1. PMID 7774957

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • TAR (HIV) RNA binding protein 2 pseudogene
  • TAR (HIV-1) RNA binding protein 2 pseudogene 1
  • TARBP2P1, RISC loading complex RNA binding subunit pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001199.4 

    Range
    101..1445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    103659244..103660588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    104786841..104788185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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