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CYP3A43 cytochrome P450 family 3 subfamily A member 43 [ Homo sapiens (human) ]

Gene ID: 64816, updated on 5-Mar-2024

Summary

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Official Symbol
CYP3A43provided by HGNC
Official Full Name
cytochrome P450 family 3 subfamily A member 43provided by HGNC
Primary source
HGNC:HGNC:17450
See related
Ensembl:ENSG00000021461 MIM:606534; AllianceGenome:HGNC:17450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. The encoded protein has a low level of testosterone hydroxylase activity, and may play a role in aging mechanisms and cancer progression. This gene is part of a cluster of cytochrome P450 genes on chromosome 7q21.1. Alternate splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]
Expression
Biased expression in liver (RPKM 2.4), testis (RPKM 0.3) and 1 other tissue See more
Orthologs
all
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Genomic context

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Location:
7q22.1
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (99828013..99866093)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (101067527..101105595)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (99425636..99463716)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene enhancer in intron 10 of CYP3A4 Neighboring gene cytochrome P450 family 3 subfamily A member 4 Neighboring gene CYP3A4 5' regulatory region Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:99406501-99407104 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:99407105-99407707 Neighboring gene cytochrome P450 family 3 subfamily A member 137, pseudogene Neighboring gene MPRA-validated peak6657 silencer Neighboring gene cytochrome P450 family 3 subfamily A member 52, pseudogene Neighboring gene olfactory receptor family 2 subfamily AE member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Effects of CYP3A43 Expression on Cell Proliferation and Migration of Lung Adenocarcinoma and Its Clinical Significance. Wei QY, et al. Int J Mol Sci, 2022 Dec 21. PMID 36613552, Free PMC Article
  2. Genetic variation in CYP3A43 is associated with response to antipsychotic medication. Brandl EJ, et al. J Neural Transm (Vienna), 2015 Jan. PMID 25150845
  3. No influence of CYP3A43 rs472660G> A on steady-state serum olanzapine concentrations in white psychiatric patients. Söderberg MM, et al. Pharmacogenet Genomics, 2014 May. PMID 24595013
  4. Analysis of restriction fragment length polymorphism of cytochrome P450 3A43 gene and evaluation of the incidence of CYP3A43*1B allele in europeoid residents of West Siberia. Shchepotina EG, et al. Bull Exp Biol Med, 2005 Dec. PMID 16848237
  5. CYP3A43 Pro(340)Ala polymorphism and prostate cancer risk in African Americans and Caucasians. Stone A, et al. Cancer Epidemiol Biomarkers Prev, 2005 May. PMID 15894682

See all (37) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Effects of CYP3A43 Expression on Cell Proliferation and Migration of Lung Adenocarcinoma and Its Clinical Significance.
    Title: Effects of CYP3A43 Expression on Cell Proliferation and Migration of Lung Adenocarcinoma and Its Clinical Significance.
  2. Cis-acting regulatory elements regulating CYP3A4 transcription in human liver.
    Title: Cis-acting regulatory elements regulating CYP3A4 transcription in human liver.
  3. We investigated the association between genetic polymorphisms in VDR, cytochrome P450 (CYP2R1, CYP24A1, and the CYP3A family) with plasma concentrations of vitamin D metabolites (25-hydroxyvitamin D3 (25(OH)D3) and proportion 24,25-dihydroxyvitamin D3 (24,25(OH)2D3)) among individuals of sub-Saharan African and European ancestry. Only CYP3A43 and VDR polymorphisms were associated with proportion 24,25(OH)2D.
    Title: Ancestry-Adjusted Vitamin D Metabolite Concentrations in Association With Cytochrome P450 3A Polymorphisms.
  4. Mutations in CYP3A43 gene is associated with prostate cancer.
    Title: Searching for candidate genes in familial BRCAX mutation carriers with prostate cancer.
  5. This review support the notion that the SNP CYP3A43this may play a role in antipsychotic response.
    Title: Genetic variation in CYP3A43 is associated with response to antipsychotic medication.
  6. CYP3A43 rs472660 is not likely to be a major contributor towards variability in systemic OLA exposure among White patients
    Title: No influence of CYP3A43 rs472660G> A on steady-state serum olanzapine concentrations in white psychiatric patients.
  7. No differences in genotype frequencies between cases and controls were observed, indicating that CYP3A43_74_delA is not associated with breast cancer risk.
    Title: The frameshift polymorphism CYP3A43_74_delA is associated with poor differentiation of breast tumors.
  8. Observational study of gene-disease association, gene-gene interaction, and gene-environment interaction. (HuGE Navigator)
    Title: A gene-based risk score for lung cancer susceptibility in smokers and ex-smokers.
  9. Observational study of gene-disease association and gene-environment interaction. (HuGE Navigator)
    Title: Joint effects of inflammation and androgen metabolism on prostate cancer severity.
  10. Observational study of gene-disease association. (HuGE Navigator)
    Title: Genetic variations in androgen metabolism genes and associations with prostate cancer in South African men.
Submit: New GeneRIF Correction See all GeneRIFs (14)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Copy number response

Description
Copy number response
Triplosensitivity

No evidence available (Last evaluated 2021-02-02)

ClinGen Genome Curation Page
Haploinsufficency

Dosage sensitivity unlikely (Last evaluated 2021-02-02)

ClinGen Genome Curation PagePubMed

EBI GWAS Catalog

Description
Eight common genetic variants associated with serum DHEAS levels suggest a key role in ageing mechanisms.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC119315, MGC119316

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables aromatase activity IEA
Inferred from Electronic Annotation
more info
  
enables estrogen 16-alpha-hydroxylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables heme binding IEA
Inferred from Electronic Annotation
more info
  
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
  
enables monooxygenase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables monooxygenase activity TAS
Traceable Author Statement
more info
  
enables testosterone 6-beta-hydroxylase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in cytochrome metabolic process TAS
Traceable Author Statement
more info
  
involved_in oxidative demethylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in steroid metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane TAS
Traceable Author Statement
more info
  

General protein information

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Preferred Names
cytochrome P450 3A43
Names
cytochrome P450, family 3, subfamily A, polypeptide 43
cytochrome P450, subfamily IIIA, polypeptide 43
NP_001265850.1
NP_073731.1
NP_476436.1
NP_476437.1
XP_016868033.1
XP_016868034.1
XP_047276701.1
XP_047276702.1
XP_054214818.1
XP_054214819.1
XP_054214820.1
XP_054214821.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007935.1 RefSeqGene

    Range
    5001..43081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001278921.2 → NP_001265850.1  cytochrome P450 3A43 isoform 4

    See identical proteins and their annotated locations for NP_001265850.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) has multiple differences including a short frameshifted segment in the central coding region, compared to variant 1. The encoded isoform (4) is shorter and has a distinct internal segment, compared to isoform 1.
    Source sequence(s)
    AF337813, BC100981
    Consensus CDS
    CCDS64723.1
    UniProtKB/Swiss-Prot
    Q9HB55
    Related
    ENSP00000416581.1, ENST00000417625.5
    Conserved Domains (1) summary
    pfam00067
    Location:115 → 383
    p450; Cytochrome P450

  2. NM_022820.5 → NP_073731.1  cytochrome P450 3A43 isoform 1

    See identical proteins and their annotated locations for NP_073731.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AF280109, AF337813
    Consensus CDS
    CCDS5675.1
    UniProtKB/Swiss-Prot
    Q9HB55
    Related
    ENSP00000222382.5, ENST00000222382.5
    Conserved Domains (1) summary
    pfam00067
    Location:39 → 494
    p450; Cytochrome P450

  3. NM_057095.3 → NP_476436.1  cytochrome P450 3A43 isoform 2

    See identical proteins and their annotated locations for NP_476436.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.
    Source sequence(s)
    AF280108, AF337813
    Consensus CDS
    CCDS5676.1
    UniProtKB/Swiss-Prot
    Q495Y1, Q75MK2, Q75MK3, Q9HB52, Q9HB53, Q9HB54, Q9HB55, Q9HB57
    Related
    ENSP00000346887.3, ENST00000354829.7
    Conserved Domains (1) summary
    pfam00067
    Location:39 → 493
    p450; Cytochrome P450

  4. NM_057096.4 → NP_476437.1  cytochrome P450 3A43 isoform 3

    See identical proteins and their annotated locations for NP_476437.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks an in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (3) is shorter, compared to isoform 1.
    Source sequence(s)
    AF280109, AF337813
    Consensus CDS
    CCDS5677.1
    UniProtKB/Swiss-Prot
    Q9HB55
    Related
    ENSP00000312110.5, ENST00000312017.9
    Conserved Domains (1) summary
    pfam00067
    Location:39 → 418
    p450; Cytochrome P450

RNA

  1. NR_103868.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) contains an alternate internal exon, and lacks several internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AF280110, AF337813, BC100982
    Related
    ENST00000436834.5

  2. NR_103869.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) contains an alternate internal exon and uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AF280111, AF337813
    Related
    ENST00000434806.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    99828013..99866093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047420745.1 → XP_047276701.1  cytochrome P450 3A43 isoform X1

  2. XM_047420746.1 → XP_047276702.1  cytochrome P450 3A43 isoform X1

  3. XM_017012545.2 → XP_016868034.1  cytochrome P450 3A43 isoform X2

  4. XM_017012544.2 → XP_016868033.1  cytochrome P450 3A43 isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    101067527..101105595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054358843.1 → XP_054214818.1  cytochrome P450 3A43 isoform X1

  2. XM_054358844.1 → XP_054214819.1  cytochrome P450 3A43 isoform X1

  3. XM_054358846.1 → XP_054214821.1  cytochrome P450 3A43 isoform X2

  4. XM_054358845.1 → XP_054214820.1  cytochrome P450 3A43 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9HB55.1 GenPept UniProtKB/Swiss-Prot:Q9HB55

Gene LinkOut

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