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ROBO2 roundabout guidance receptor 2 [ Homo sapiens (human) ]

Gene ID: 6092, updated on 5-Mar-2024

Summary

Official Symbol
ROBO2provided by HGNC
Official Full Name
roundabout guidance receptor 2provided by HGNC
Primary source
HGNC:HGNC:10250
See related
Ensembl:ENSG00000185008 MIM:602431; AllianceGenome:HGNC:10250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SAX3
Summary
The protein encoded by this gene belongs to the ROBO family, part of the immunoglobulin superfamily of proteins that are highly conserved from fly to human. The encoded protein is a transmembrane receptor for the slit homolog 2 protein and functions in axon guidance and cell migration. Mutations in this gene are associated with vesicoureteral reflux, characterized by the backward flow of urine from the bladder into the ureters or the kidney. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]
Expression
Broad expression in brain (RPKM 5.1), lung (RPKM 2.8) and 14 other tissues See more
Orthologs
NEW
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Genomic context

Location:
3p12.3
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (75906675..77649964)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (75959914..77704808)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (75955826..77699115)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:75821208-75821708 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:75821709-75822209 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20105 Neighboring gene MPRA-validated peak4708 silencer Neighboring gene RNA, 7SL, cytoplasmic 92, pseudogene Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:75899387-75899888 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:75899889-75900388 Neighboring gene zinc finger protein 717 Neighboring gene microRNA 4273 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:75955554-75956084 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:75956085-75956613 Neighboring gene NANOG hESC enhancer GRCh37_chr3:75982289-75982809 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:76008545-76009744 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:76092499-76093032 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:76093033-76093565 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:76119119-76119976 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:76247194-76247810 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:76251853-76253052 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71192 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:76291943-76292450 Neighboring gene uncharacterized LOC124900544 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:76518793-76519992 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:76546619-76547252 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71246 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20106 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:76600516-76601016 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:76601017-76601517 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71345 Neighboring gene CAP1 pseudogene 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71357 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_71361 Neighboring gene MPRA-validated peak4710 silencer Neighboring gene uncharacterized LOC102724949 Neighboring gene MPRA-validated peak4713 silencer Neighboring gene MPRA-validated peak4717 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:77039649-77040150 Neighboring gene MPRA-validated peak4720 silencer Neighboring gene MPRA-validated peak4719 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr3:77214086-77214814 Neighboring gene RNA, U6 small nuclear 386, pseudogene Neighboring gene MPRA-validated peak4724 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:77359951-77361150 Neighboring gene voltage dependent anion channel 1 pseudogene 7 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:77524547-77525070 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:77582237-77583436 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:77623115-77624314 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:77735685-77736226 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:77844088-77844666 Neighboring gene uncharacterized LOC105377171 Neighboring gene RNA, U6 small nuclear 217, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Vesicoureteral reflux 2
MedGen: C1970483 OMIM: 610878 GeneReviews: Not available
Compare labs

EBI GWAS Catalog

Description
A genome-wide association study of schizophrenia using brain activation as a quantitative phenotype.
EBI GWAS Catalog
Common variation near ROBO2 is associated with expressive vocabulary in infancy.
EBI GWAS Catalog
Genetic variants associated with disordered eating.
EBI GWAS Catalog
Genome-wide association study of chronic periodontitis in a general German population.
EBI GWAS Catalog
Genome-wide association study of circulating estradiol, testosterone, and sex hormone-binding globulin in postmenopausal women.
EBI GWAS Catalog
Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
EBI GWAS Catalog
Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
EBI GWAS Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • KIAA1568

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables axon guidance receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables axon guidance receptor activity NAS
Non-traceable Author Statement
more info
PubMed 
enables identical protein binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in aorta development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in aortic valve morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in apoptotic process involved in luteolysis IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in axon guidance ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in axon midline choice point recognition ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in brain development IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in cellular response to hormone stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in central nervous system development NAS
Non-traceable Author Statement
more info
PubMed 
involved_in chemotaxis IEA
Inferred from Electronic Annotation
more info
 
involved_in endocardial cushion formation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in heart induction ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IDA
Inferred from Direct Assay
more info
PubMed 
involved_in metanephros development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of negative chemotaxis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of synapse assembly ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in olfactory bulb interneuron development ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in outflow tract septum morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of Notch signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of axonogenesis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in pulmonary valve morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in retinal ganglion cell axon guidance ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in ureteric bud development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in ventricular septum morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
located_in axolemma ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
located_in extracellular exosome HDA PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
roundabout homolog 2
Names
roundabout, axon guidance receptor, homolog 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_027734.2 RefSeqGene

    Range
    1138406..1748271
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001128929.3NP_001122401.1  roundabout homolog 2 isoform ROBO2a precursor

    See identical proteins and their annotated locations for NP_001122401.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the use of an alternate promoter and has multiple differences compared to variant 4. These differences result in a distinct 5' UTR and the use of an alternate start codon compared to variant 4. The encoded protein (isoform ROBO2a; PMID 16829019) has a distinct N-terminus and is shorter than isoform 4.
    Source sequence(s)
    AC126467, AC133040, DQ533873
    Consensus CDS
    CCDS54609.1
    UniProtKB/Swiss-Prot
    Q9HCK4
    Related
    ENSP00000417335.2, ENST00000487694.7
    Conserved Domains (7) summary
    cd00096
    Location:451518
    Ig; Immunoglobulin domain
    cd05726
    Location:344433
    Ig4_Robo; Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
    cd07693
    Location:46145
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00410
    Location:440521
    IG_like; Immunoglobulin like
    cd00063
    Location:538631
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:241326
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:153237
    Ig; Immunoglobulin domain
  2. NM_001290039.2NP_001276968.1  roundabout homolog 2 isoform 3 precursor

    See identical proteins and their annotated locations for NP_001276968.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 3' coding region compared to variant 4. The encoded protein (isoform 3) is shorter than variant 4.
    Source sequence(s)
    AC117515, AC117516, AC133040, BC144306, DQ533874
    UniProtKB/Swiss-Prot
    Q9HCK4
    Conserved Domains (7) summary
    cd00096
    Location:439506
    Ig; Immunoglobulin domain
    cd05726
    Location:332421
    Ig4_Robo; Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
    cd07693
    Location:30129
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00410
    Location:428509
    IG_like; Immunoglobulin like
    cd00063
    Location:526619
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:225310
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:137221
    Ig; Immunoglobulin domain
  3. NM_001290040.2NP_001276969.1  roundabout homolog 2 isoform 4 precursor

    See identical proteins and their annotated locations for NP_001276969.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) represents the longest transcript and encodes the longest isoform (4).
    Source sequence(s)
    AC117515, AC133040, BC144303, DQ533874
    Consensus CDS
    CCDS93318.1
    UniProtKB/TrEMBL
    F8W703
    Related
    ENSP00000327536.9, ENST00000332191.13
    Conserved Domains (7) summary
    cd00096
    Location:439506
    Ig; Immunoglobulin domain
    cd05726
    Location:332421
    Ig4_Robo; Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
    cd07693
    Location:30129
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00410
    Location:428509
    IG_like; Immunoglobulin like
    cd00063
    Location:526619
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:225310
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:137221
    Ig; Immunoglobulin domain
  4. NM_001290065.2NP_001276994.1  roundabout homolog 2 isoform 5

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) has multiple differences compared to variant 4. These differences result in a distinct 5' UTR and cause translation initiation at a downstream start codon compared to variant 4; the 5'-most initiation codon, as used in variant 4, is associated with a truncated ORF that would render the transcript a candidate for nonsense-mediated decay (NMD). Leaky scanning may allow translation initiation at the downstream AUG resulting in an isoform (5) with a shorter N-terminus compared to isoform 4.
    Source sequence(s)
    AC117515, AC133040, BC144302, DQ533874
    UniProtKB/Swiss-Prot
    Q9HCK4
    Conserved Domains (1) summary
    cd00063
    Location:147239
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
  5. NM_001378190.1NP_001365119.1  roundabout homolog 2 isoform 6 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC126467, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:542635
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:152155
    Ig; Ig strand A [structural motif]
    cd05726
    Location:335432
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:47145
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:439525
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:152237
    Ig; Immunoglobulin domain
  6. NM_001378191.1NP_001365120.1  roundabout homolog 2 isoform 7 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC126467, AC133040
    Consensus CDS
    CCDS93314.1
    UniProtKB/TrEMBL
    A0A8Q3SIW8
    Related
    ENSP00000512767.1, ENST00000696630.1
    Conserved Domains (6) summary
    cd00063
    Location:542635
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:152155
    Ig; Ig strand A [structural motif]
    cd05726
    Location:335432
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:47145
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:439525
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:152237
    Ig; Immunoglobulin domain
  7. NM_001378192.1NP_001365121.1  roundabout homolog 2 isoform 8 precursor

    Status: REVIEWED

    Source sequence(s)
    AC067717, AC117515, AC117516, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:549642
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:159162
    Ig; Ig strand A [structural motif]
    cd05726
    Location:342439
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:54152
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:446532
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:159244
    Ig; Immunoglobulin domain
  8. NM_001378193.1NP_001365122.1  roundabout homolog 2 isoform 9 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC133040
    Consensus CDS
    CCDS93321.1
    UniProtKB/TrEMBL
    H7C4J7
    Related
    ENSP00000417471.2, ENST00000490534.2
    Conserved Domains (6) summary
    cd00063
    Location:522615
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:136139
    Ig; Ig strand A [structural motif]
    cd05726
    Location:315412
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:31129
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:419505
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:136221
    Ig; Immunoglobulin domain
  9. NM_001378194.1NP_001365123.1  roundabout homolog 2 isoform 10 precursor

    Status: REVIEWED

    Source sequence(s)
    AC067717, AC117515, AC117516, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:549642
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:159162
    Ig; Ig strand A [structural motif]
    cd05726
    Location:342439
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:54152
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:446532
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:159244
    Ig; Immunoglobulin domain
  10. NM_001378195.1NP_001365124.1  roundabout homolog 2 isoform 11 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC126467, AC133040
    Consensus CDS
    CCDS93316.1
    UniProtKB/TrEMBL
    A0A8Q3SIU0
    Related
    ENSP00000512766.1, ENST00000696629.1
    Conserved Domains (6) summary
    cd00063
    Location:542635
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:152155
    Ig; Ig strand A [structural motif]
    cd05726
    Location:335432
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:47145
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:439525
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:152237
    Ig; Immunoglobulin domain
  11. NM_001378196.1NP_001365125.1  roundabout homolog 2 isoform 12 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC126467, AC133040
    Consensus CDS
    CCDS93315.1
    UniProtKB/TrEMBL
    H7C4U9
    Related
    ENSP00000418190.2, ENST00000471893.2
    Conserved Domains (6) summary
    cd00063
    Location:542635
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:152155
    Ig; Ig strand A [structural motif]
    cd05726
    Location:335432
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:47145
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:439525
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:152237
    Ig; Immunoglobulin domain
  12. NM_001378197.1NP_001365126.1  roundabout homolog 2 isoform 13 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC133040
    Consensus CDS
    CCDS93320.1
    UniProtKB/TrEMBL
    A0A994J7I9
    Related
    ENSP00000516193.1, ENST00000705983.1
    Conserved Domains (6) summary
    cd00063
    Location:522615
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:136139
    Ig; Ig strand A [structural motif]
    cd05726
    Location:315412
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:31129
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:419505
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:136221
    Ig; Immunoglobulin domain
  13. NM_001378198.1NP_001365127.1  roundabout homolog 2 isoform 14 precursor

    Status: REVIEWED

    Source sequence(s)
    AC067717, AC117515, AC117516, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:549642
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:159162
    Ig; Ig strand A [structural motif]
    cd05726
    Location:342439
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:54152
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:446532
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:159244
    Ig; Immunoglobulin domain
  14. NM_001378199.1NP_001365128.1  roundabout homolog 2 isoform 15 precursor

    Status: REVIEWED

    Source sequence(s)
    AC067717, AC117515, AC117516, AC133040
    Consensus CDS
    CCDS93317.1
    UniProtKB/TrEMBL
    H7C4W9
    Related
    ENSP00000418446.2, ENST00000475334.2
    Conserved Domains (6) summary
    cd00063
    Location:549642
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:159162
    Ig; Ig strand A [structural motif]
    cd05726
    Location:342439
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:54152
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:446532
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:159244
    Ig; Immunoglobulin domain
  15. NM_001378200.1NP_001365129.1  roundabout homolog 2 isoform 16 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC126467, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:542635
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:152155
    Ig; Ig strand A [structural motif]
    cd05726
    Location:335432
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:47145
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:439525
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:152237
    Ig; Immunoglobulin domain
  16. NM_001378201.1NP_001365130.1  roundabout homolog 2 isoform 17 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC126467, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:542635
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:152155
    Ig; Ig strand A [structural motif]
    cd05726
    Location:335432
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:47145
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:439525
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:152237
    Ig; Immunoglobulin domain
  17. NM_001378202.1NP_001365131.1  roundabout homolog 2 isoform 18 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:526619
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:136139
    Ig; Ig strand A [structural motif]
    cd05726
    Location:319416
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:31129
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:423509
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:136221
    Ig; Immunoglobulin domain
  18. NM_001378203.1NP_001365132.1  roundabout homolog 2 isoform 19 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC126467, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:542635
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:152155
    Ig; Ig strand A [structural motif]
    cd05726
    Location:335432
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:47145
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:439525
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:152237
    Ig; Immunoglobulin domain
  19. NM_001394212.1NP_001381141.1  roundabout homolog 2 isoform 20 precursor

    Status: REVIEWED

    Source sequence(s)
    AC067717, AC117515, AC117516, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:545638
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:159162
    Ig; Ig strand A [structural motif]
    cd05726
    Location:338435
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:54152
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:442528
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:159244
    Ig; Immunoglobulin domain
  20. NM_001394213.1NP_001381142.1  roundabout homolog 2 isoform 21 precursor

    Status: REVIEWED

    Source sequence(s)
    AC067717, AC117515, AC117516, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:549642
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:159162
    Ig; Ig strand A [structural motif]
    cd05726
    Location:342439
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:54152
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:446532
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:159244
    Ig; Immunoglobulin domain
  21. NM_001394214.1NP_001381143.1  roundabout homolog 2 isoform 22 precursor

    Status: REVIEWED

    Source sequence(s)
    AC067717, AC117515, AC117516, AC133040
    Conserved Domains (6) summary
    cd00063
    Location:545638
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:159162
    Ig; Ig strand A [structural motif]
    cd05726
    Location:338435
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:54152
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:442528
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:159244
    Ig; Immunoglobulin domain
  22. NM_001395656.1NP_001382585.1  roundabout homolog 2 isoform 23 precursor

    Status: REVIEWED

    Source sequence(s)
    AC117515, AC117516, AC133040
    Consensus CDS
    CCDS93319.1
    UniProtKB/TrEMBL
    A0A8Q3WLE3
    Related
    ENSP00000512738.1, ENST00000696593.1
    Conserved Domains (6) summary
    cd00063
    Location:526619
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:136139
    Ig; Ig strand A [structural motif]
    cd05726
    Location:319416
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:31129
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:423509
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:136221
    Ig; Immunoglobulin domain
  23. NM_001395657.1NP_001382586.1  roundabout homolog 2 isoofrm 24 precursor

    Status: REVIEWED

    Source sequence(s)
    AC067717, AC117515, AC117516, AC133040
    Conserved Domains (2) summary
    smart00409
    Location:447528
    IG; Immunoglobulin
    cd00063
    Location:545638
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
  24. NM_002942.5NP_002933.1  roundabout homolog 2 isoform ROBO2b precursor

    See identical proteins and their annotated locations for NP_002933.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks two alternate in-frame exons in the coding region compared to variant 4. The encoded protein (isoform ROBO2b; PMID 16829019) is shorter than variant 4.
    Source sequence(s)
    AC117515, AC133040, DQ533874
    Consensus CDS
    CCDS43109.1
    UniProtKB/Swiss-Prot
    O43608, Q19AB4, Q19AB5, Q9HCK4
    Related
    ENSP00000417164.1, ENST00000461745.5
    Conserved Domains (5) summary
    cd05726
    Location:328417
    Ig4_Robo; Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
    cd07693
    Location:30129
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00409
    Location:424505
    IG; Immunoglobulin
    cd00063
    Location:522615
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cl11960
    Location:137221
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    75906675..77649964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047448673.1XP_047304629.1  roundabout homolog 2 isoform X11

  2. XM_011533981.3XP_011532283.1  roundabout homolog 2 isoform X1

    See identical proteins and their annotated locations for XP_011532283.1

    Conserved Domains (6) summary
    cd05726
    Location:355444
    Ig4_Robo; Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
    cd07693
    Location:53152
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00409
    Location:451532
    IG; Immunoglobulin
    cd00063
    Location:549642
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam16599
    Location:13741431
    PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
    cl11960
    Location:160244
    Ig; Immunoglobulin domain
  3. XM_011533983.2XP_011532285.1  roundabout homolog 2 isoform X5

    See identical proteins and their annotated locations for XP_011532285.1

    Conserved Domains (6) summary
    cd00063
    Location:549642
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:159162
    Ig; Ig strand A [structural motif]
    cd05726
    Location:342439
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:54152
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:446532
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:159244
    Ig; Immunoglobulin domain
  4. XM_017006988.2XP_016862477.1  roundabout homolog 2 isoform X6

    Conserved Domains (6) summary
    cd00063
    Location:549642
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:159162
    Ig; Ig strand A [structural motif]
    cd05726
    Location:342439
    IgI_4_Robo; Fourth immunoglobulin (Ig)-like domain in Robo (roundabout) receptors; member of the I-set of Ig superfamily (IgSF) domains
    cd07693
    Location:54152
    IgC_1_Robo; First immunoglobulin (Ig)-like constant domain in Robo (roundabout) receptors, and similar domains
    cd20952
    Location:446532
    IgI_5_Robo; Fifth Ig-like domain of Roundabout (Robo) homolog 1/2, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:159244
    Ig; Immunoglobulin domain
  5. XM_017006994.2XP_016862483.1  roundabout homolog 2 isoform X12

  6. XM_011533982.2XP_011532284.1  roundabout homolog 2 isoform X3

    See identical proteins and their annotated locations for XP_011532284.1

    Conserved Domains (7) summary
    cd00096
    Location:462529
    Ig; Immunoglobulin domain
    cd05726
    Location:355444
    Ig4_Robo; Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
    cd07693
    Location:53152
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00410
    Location:451532
    IG_like; Immunoglobulin like
    cd00063
    Location:549642
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:248333
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:160244
    Ig; Immunoglobulin domain
  7. XM_047448672.1XP_047304628.1  roundabout homolog 2 isoform X10

  8. XM_047448674.1XP_047304630.1  roundabout homolog 2 isoform X13

  9. XM_017006987.2XP_016862476.1  roundabout homolog 2 isoform X4

  10. XM_047448671.1XP_047304627.1  roundabout homolog 2 isoform X9

  11. XM_017007002.2XP_016862491.1  roundabout homolog 2 isoform X15

  12. XM_047448676.1XP_047304632.1  roundabout homolog 2 isoform X14

  13. XM_047448677.1XP_047304633.1  roundabout homolog 2 isoform X16

  14. XM_017006986.2XP_016862475.1  roundabout homolog 2 isoform X2

    Conserved Domains (7) summary
    cd00096
    Location:439506
    Ig; Immunoglobulin domain
    cd05726
    Location:332421
    Ig4_Robo; Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors
    cd07693
    Location:30129
    Ig1_Robo; First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins
    smart00410
    Location:428509
    IG_like; Immunoglobulin like
    cd00063
    Location:526619
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:225310
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:137221
    Ig; Immunoglobulin domain
  15. XM_047448670.1XP_047304626.1  roundabout homolog 2 isoform X8

  16. XM_047448669.1XP_047304625.1  roundabout homolog 2 isoform X7

  17. XM_047448678.1XP_047304634.1  roundabout homolog 2 isoform X17

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    75959914..77704808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054347467.1XP_054203442.1  roundabout homolog 2 isoform X11

  2. XM_054347457.1XP_054203432.1  roundabout homolog 2 isoform X1

  3. XM_054347461.1XP_054203436.1  roundabout homolog 2 isoform X5

  4. XM_054347462.1XP_054203437.1  roundabout homolog 2 isoform X6

  5. XM_054347468.1XP_054203443.1  roundabout homolog 2 isoform X12

  6. XM_054347459.1XP_054203434.1  roundabout homolog 2 isoform X3

  7. XM_054347466.1XP_054203441.1  roundabout homolog 2 isoform X10

  8. XM_054347469.1XP_054203444.1  roundabout homolog 2 isoform X13

  9. XM_054347460.1XP_054203435.1  roundabout homolog 2 isoform X4

  10. XM_054347465.1XP_054203440.1  roundabout homolog 2 isoform X9

  11. XM_054347471.1XP_054203446.1  roundabout homolog 2 isoform X15

  12. XM_054347470.1XP_054203445.1  roundabout homolog 2 isoform X14

  13. XM_054347472.1XP_054203447.1  roundabout homolog 2 isoform X16

  14. XM_054347458.1XP_054203433.1  roundabout homolog 2 isoform X2

  15. XM_054347464.1XP_054203439.1  roundabout homolog 2 isoform X8

  16. XM_054347463.1XP_054203438.1  roundabout homolog 2 isoform X7

  17. XM_054347473.1XP_054203448.1  roundabout homolog 2 isoform X17