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GLT8D1 glycosyltransferase 8 domain containing 1 [ Homo sapiens (human) ]

Gene ID: 55830, updated on 30-Mar-2024

Summary

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Official Symbol
GLT8D1provided by HGNC
Official Full Name
glycosyltransferase 8 domain containing 1provided by HGNC
Primary source
HGNC:HGNC:24870
See related
Ensembl:ENSG00000016864 MIM:618399; AllianceGenome:HGNC:24870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AD-017; MSTP139
Summary
This gene encodes a member of the glycosyltransferase family. The specific function of this protein has not been determined. Alternative splicing results in multiple transcript variants of this gene [provided by RefSeq, May 2013]
Expression
Ubiquitous expression in thyroid (RPKM 29.7), testis (RPKM 28.8) and 25 other tissues See more
Orthologs
mouse all
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Genomic context

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See GLT8D1 in Genome Data Viewer
Location:
3p21.1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (52694486..52705791, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (52727397..52738983, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (52728502..52739807, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene G protein nucleolar 3 Neighboring gene small nucleolar RNA, C/D box 19C Neighboring gene small nucleolar RNA, C/D box 69 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19946 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14452 Neighboring gene signal peptidase complex subunit 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:52749367-52749954 Neighboring gene NIMA related kinase 4 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr3:52765581-52766780 Neighboring gene zinc finger protein 610 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. GLT8D1 may not be significant in Chinese sporadic amyotrophic lateral sclerosis patients. Yilihamu M, et al. Neurobiol Aging, 2021 Jun. PMID 33714647
  2. Mutation screening and burden analysis of GLT8D1 in Chinese patients with amyotrophic lateral sclerosis. Cao B, et al. Neurobiol Aging, 2021 May. PMID 33581933
  3. GLT8D1 overexpression as a novel prognostic biomarker in human cutaneous melanoma. Hu H, et al. Melanoma Res, 2019 Dec. PMID 31305325
  4. Glycosyltransferase GLT8D1 and GLT8D2 serve as potential prognostic biomarkers correlated with Tumor Immunity in Gastric Cancer. Xu H, et al. BMC Med Genomics, 2023 Jun 5. PMID 37277853, Free PMC Article
  5. Genetic analysis of GLT8D1 and ARPP21 in Australian familial and sporadic amyotrophic lateral sclerosis. Chan Moi Fat S, et al. Neurobiol Aging, 2021 May. PMID 33581934

See all (43) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Glycosyltransferase 8 domain-containing protein 1 (GLT8D1) is a UDP-dependent galactosyltransferase.
    Title: Glycosyltransferase 8 domain-containing protein 1 (GLT8D1) is a UDP-dependent galactosyltransferase.
  2. Glycosyltransferase GLT8D1 and GLT8D2 serve as potential prognostic biomarkers correlated with Tumor Immunity in Gastric Cancer.
    Title: Glycosyltransferase GLT8D1 and GLT8D2 serve as potential prognostic biomarkers correlated with Tumor Immunity in Gastric Cancer.
  3. GLT8D1 may not be significant in Chinese sporadic amyotrophic lateral sclerosis patients.
    Title: GLT8D1 may not be significant in Chinese sporadic amyotrophic lateral sclerosis patients.
  4. Genetic analysis of GLT8D1 and ARPP21 in Australian familial and sporadic amyotrophic lateral sclerosis.
    Title: Genetic analysis of GLT8D1 and ARPP21 in Australian familial and sporadic amyotrophic lateral sclerosis.
  5. Mutation screening and burden analysis of GLT8D1 in Chinese patients with amyotrophic lateral sclerosis.
    Title: Mutation screening and burden analysis of GLT8D1 in Chinese patients with amyotrophic lateral sclerosis.
  6. Germinal GLT8D1, GATAD2A and SLC25A39 mutations in a patient with a glomangiopericytal tumor and five different sarcomas over a 10-year period.
    Title: Germinal GLT8D1, GATAD2A and SLC25A39 mutations in a patient with a glomangiopericytal tumor and five different sarcomas over a 10-year period.
  7. Mutation analysis of GLT8D1 and ARPP21 genes in amyotrophic lateral sclerosis patients from mainland China.
    Title: Mutation analysis of GLT8D1 and ARPP21 genes in amyotrophic lateral sclerosis patients from mainland China.
  8. The GEO data analysis exhibited that the GLT8D1 mRNA expression was upregulated in the melanoma samples compared with the benign nevus samples. Likewise, GLT8D1 protein expression in the cutaneous melanoma and mucosal melanoma samples was significantly higher than that in the benign nevus tissue samples.
    Title: GLT8D1 overexpression as a novel prognostic biomarker in human cutaneous melanoma.
  9. Amyotrophic lateral sclerosis (ALS)-causing mutations found within the gene encoding the glycosyltransferase GLT8D1. Five ALS-associated GLT8D1 mutations proximate to the substrate binding site.
    Title: Mutations in the Glycosyltransferase Domain of GLT8D1 Are Associated with Familial Amyotrophic Lateral Sclerosis.
  10. ALMS1, GLT8D1, and CSNK2B are schizophrenia risk genes.
    Title: Comprehensive integrative analyses identify GLT8D1 and CSNK2B as schizophrenia risk genes.
Submit: New GeneRIF Correction See all GeneRIFs (13)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Biological insights from 108 schizophrenia-associated genetic loci.
EBI GWAS Catalog
Genome-wide association analysis identifies 13 new risk loci for schizophrenia.
EBI GWAS Catalog
Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.
EBI GWAS Catalog
Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis.
EBI GWAS Catalog
Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp120 env Addition of peripheral sugar residues such as galactose, N-acetylglucosamine, and sialic acid to HIV-1 gp120 is processed by specific glycosyltransferase PubMed

Go to the HIV-1, Human Interaction Database

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ14611, DKFZp781O20198

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane HDA PubMed 

General protein information

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Preferred Names
glycosyltransferase 8 domain-containing protein 1
Names
glycosyltransferase AD-017
NP_001010983.1
NP_001265209.1
NP_001265210.1
NP_060916.1
NP_690909.1
XP_047304521.1
XP_047304522.1
XP_047304523.1
XP_047304524.1
XP_047304525.1
XP_047304526.1
XP_047304527.1
XP_047304528.1
XP_047304529.1
XP_054203218.1
XP_054203219.1
XP_054203220.1
XP_054203221.1
XP_054203222.1
XP_054203223.1
XP_054203224.1
XP_054203225.1
XP_054203226.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001010983.3 → NP_001010983.1  glycosyltransferase 8 domain-containing protein 1

    See identical proteins and their annotated locations for NP_001010983.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) represents the longest transcript. Variants 1, 2, 3, 4 and 5 encode the same protein.
    Source sequence(s)
    AF157318, AF175227, AJ271710, BI495741, BI559798
    Consensus CDS
    CCDS2862.1
    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5
    Conserved Domains (1) summary
    cd06429
    Location:66 → 351
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function

  2. NM_001278280.2 → NP_001265209.1  glycosyltransferase 8 domain-containing protein 1

    See identical proteins and their annotated locations for NP_001265209.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 3. Variants 1, 2, 3, 4 and 5 encode the same protein.
    Source sequence(s)
    AF157318, AF176777, AK027517, BC119671, BI495741, BI559798
    Consensus CDS
    CCDS2862.1
    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5
    Conserved Domains (1) summary
    cd06429
    Location:66 → 351
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function

  3. NM_001278281.2 → NP_001265210.1  glycosyltransferase 8 domain-containing protein 1

    See identical proteins and their annotated locations for NP_001265210.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 3. Variants 1, 2, 3, 4 and 5 encode the same protein.
    Source sequence(s)
    AK027517, BI495741, CR749821
    Consensus CDS
    CCDS2862.1
    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5
    Related
    ENSP00000419612.2, ENST00000478968.6
    Conserved Domains (1) summary
    cd06429
    Location:66 → 351
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function

  4. NM_018446.4 → NP_060916.1  glycosyltransferase 8 domain-containing protein 1

    See identical proteins and their annotated locations for NP_060916.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 3. Variants 1, 2, 3, 4 and 5 encode the same protein.
    Source sequence(s)
    AF157318, BI495741, BI559798
    Consensus CDS
    CCDS2862.1
    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5
    Related
    ENSP00000266014.5, ENST00000266014.11
    Conserved Domains (1) summary
    cd06429
    Location:66 → 351
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function

  5. NM_152932.3 → NP_690909.1  glycosyltransferase 8 domain-containing protein 1

    See identical proteins and their annotated locations for NP_690909.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 3. Variants 1, 2, 3, 4 and 5 encode the same protein.
    Source sequence(s)
    AK027517, AK311674, BC119670, BI495741
    Consensus CDS
    CCDS2862.1
    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5
    Related
    ENSP00000378263.3, ENST00000394783.7
    Conserved Domains (1) summary
    cd06429
    Location:66 → 351
    GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    52694486..52705791 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047448569.1 → XP_047304525.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5
    Related
    ENSP00000418853.1, ENST00000491606.5

  2. XM_047448570.1 → XP_047304526.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  3. XM_047448573.1 → XP_047304529.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  4. XM_047448572.1 → XP_047304528.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  5. XM_047448568.1 → XP_047304524.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  6. XM_047448571.1 → XP_047304527.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  7. XM_047448565.1 → XP_047304521.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  8. XM_047448567.1 → XP_047304523.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  9. XM_047448566.1 → XP_047304522.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    52727397..52738983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054347250.1 → XP_054203225.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  2. XM_054347247.1 → XP_054203222.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  3. XM_054347249.1 → XP_054203224.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  4. XM_054347248.1 → XP_054203223.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  5. XM_054347246.1 → XP_054203221.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  6. XM_054347251.1 → XP_054203226.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  7. XM_054347243.1 → XP_054203218.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  8. XM_054347245.1 → XP_054203220.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5

  9. XM_054347244.1 → XP_054203219.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q68CQ7, Q7Z4D1, Q8N2J6, Q9P0I5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q68CQ7.2 GenPept UniProtKB/Swiss-Prot:Q68CQ7

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