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CMPK1 cytidine/uridine monophosphate kinase 1 [ Homo sapiens (human) ]

Gene ID: 51727, updated on 5-Mar-2024

Summary

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Official Symbol
CMPK1provided by HGNC
Official Full Name
cytidine/uridine monophosphate kinase 1provided by HGNC
Primary source
HGNC:HGNC:18170
See related
Ensembl:ENSG00000162368 MIM:191710; AllianceGenome:HGNC:18170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CK; CMK; UMK; CMPK; UMPK; UMP-CMPK
Summary
This gene encodes one of the enzymes required for cellular nucleic acid biosynthesis. This enzyme catalyzes the transfer of a phosphate group from ATP to CMP, UMP, or dCMP, to form the corresponding diphosphate nucleotide. Alternate splicing results in both coding and non-coding transcript variants. [provided by RefSeq, Feb 2012]
Expression
Ubiquitous expression in colon (RPKM 74.1), duodenum (RPKM 71.2) and 25 other tissues See more
Orthologs
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Genomic context

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Location:
1p33
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (47333790..47378839)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (47212232..47257303)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (47799462..47844511)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47694003-47694964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47694965-47695926 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:47696119-47697092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47697093-47698066 Neighboring gene TAL bHLH transcription factor 1, erythroid differentiation factor Neighboring gene STIL centriolar assembly protein Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:47772177-47772742 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:47779829-47780558 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:47799401-47800204 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:47800205-47801008 Neighboring gene Sharpr-MPRA regulatory region 7712 Neighboring gene long intergenic non-protein coding RNA 1389 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_8190 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 855 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:47899798-47900313 Neighboring gene forkhead box E3 Neighboring gene FOXD2 adjacent opposite strand RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. MiR-3613-3p impairs IFN-induced immune response by targeting CMPK1 in chronic hepatitis B. Zhao Y, et al. Infect Genet Evol, 2019 Oct. PMID 31201869
  2. Prognostic significance of nuclear expression of UMP-CMP kinase in triple negative breast cancer patients. Liu NQ, et al. Sci Rep, 2016 Aug 25. PMID 27558661, Free PMC Article
  3. The contribution of CMP kinase to the efficiency of DNA repair. Tsao N, et al. Cell Cycle, 2015. PMID 25659034, Free PMC Article
  4. Effect of genetic polymorphisms on therapeutic response and clinical outcomes in pancreatic cancer patients treated with gemcitabine. Woo HI, et al. Pharmacogenomics, 2012 Jul. PMID 22838950
  5. UMP/CMPK is not the critical enzyme in the metabolism of pyrimidine ribonucleotide and activation of deoxycytidine analogs in human RKO cells. Hu R, et al. PLoS One, 2011 May 3. PMID 21559290, Free PMC Article

See all (65) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Twenty-Four Percent of Wildland Firefighters Reach Critical Levels of Serum Creatine Kinase During 80-Hour Critical Training.
    Title: Twenty-Four Percent of Wildland Firefighters Reach Critical Levels of Serum Creatine Kinase During 80-Hour Critical Training.
  2. Study found that CMPK1 is a direct target of miR-3613 which bids to its 3'UTR.
    Title: MiR-3613-3p impairs IFN-induced immune response by targeting CMPK1 in chronic hepatitis B.
  3. Nuclear CMPK1 expression is indicative of poor prognosis in the triple negative breast cancer patients.
    Title: Prognostic significance of nuclear expression of UMP-CMP kinase in triple negative breast cancer patients.
  4. TGF-b1 inhibited the expression of CMPK, which was blocked in the presence of a TGF-b type I receptor, SB431542, and was abolished by the inhibitor of miR-130b-3p, indicating that CMPK is regulated by the TGF-b signalling pathway through the upregulation of miR-130b-3p.
    Title: Cytidine monophosphate kinase is inhibited by the TGF-β signalling pathway through the upregulation of miR-130b-3p in human epithelial ovarian cancer.
  5. The role of CMP/UMP kinase (CMPK), an enzyme catalyzes cytidine diphosphate formation, in DNA repair, was investigated.
    Title: The contribution of CMP kinase to the efficiency of DNA repair.
  6. CMPK1 and RBP3 are associated with corneal curvature in Asian populations.
    Title: CMPK1 and RBP3 are associated with corneal curvature in Asian populations.
  7. In particular, polymorphisms of the CMPK1 gene seem to provide important prognostic information
    Title: Effect of genetic polymorphisms on therapeutic response and clinical outcomes in pancreatic cancer patients treated with gemcitabine.
  8. Single-nucleotide polymorphisms in CMPK1 gene is associated with treatment response in non-small cell lung cancer.
    Title: Differential effect of polymorphisms of CMPK1 and RRM1 on survival in advanced non-small cell lung cancer patients treated with gemcitabine or taxane/cisplatinum.
  9. UMP/CMP kinase (EC 2.7.4.14) is not critical for the phosphorylation of CMP, dCMP and maintenance of natural nucleotide pools in cells
    Title: UMP/CMPK is not the critical enzyme in the metabolism of pyrimidine ribonucleotide and activation of deoxycytidine analogs in human RKO cells.
  10. thymidylate synthase/ribonucleotide reductase gene silencing and deoxycytidine kinase::uridine monophosphate kinase fusion gene gene overexpression markedly improved gemcitabine's therapeutic activity
    Title: Gemcitabine-based chemogene therapy for pancreatic cancer using Ad-dCK::UMK GDEPT and TS/RR siRNA strategies.
Submit: New GeneRIF Correction See all GeneRIFs (14)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
CMPK1 and RBP3 are associated with corneal curvature in Asian populations.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables CMP kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables UMP kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables UMP kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables cytidylate kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables dCMP kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables nucleoside diphosphate kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables nucleoside monophosphate kinase activity EXP
Inferred from Experiment
more info
 PubMed 
enables uridine kinase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' pyrimidine nucleobase biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in CDP biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in UDP biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in UDP biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in UMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in nucleobase-containing small molecule interconversion TAS
Traceable Author Statement
more info
  
involved_in nucleoside monophosphate phosphorylation IEA
Inferred from Electronic Annotation
more info
  
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
  
involved_in pyrimidine ribonucleotide biosynthetic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in extracellular exosome HDA PubMed 
located_in nucleolus IDA
Inferred from Direct Assay
more info
  
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
UMP-CMP kinase
Names
UMP/CMP kinase
cytidine monophosphate (UMP-CMP) kinase 1, cytosolic
cytidylate kinase
dCMP kinase
deoxycytidylate kinase
nucleoside-diphosphate kinase
uridine monophosphate kinase
uridine monophosphate/cytidine monophosphate kinase
NP_001129612.1
NP_001353064.1
NP_057392.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001136140.2 → NP_001129612.1  UMP-CMP kinase isoform b

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AF070416, AL513322, AL607122, DB494965
    Consensus CDS
    CCDS44135.1
    UniProtKB/TrEMBL
    A0A494BXC7
    Related
    ENSP00000398192.2, ENST00000450808.2
    Conserved Domains (2) summary
    cd01428
    Location:37 → 167
    ADK; Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for ...
    TIGR01359
    Location:37 → 176
    UMP_CMP_kin_fam; UMP-CMP kinase family

  2. NM_001366135.1 → NP_001353064.1  UMP-CMP kinase isoform c

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes isoform c.
    Source sequence(s)
    AL513322, AL607122
    Consensus CDS
    CCDS90947.1
    UniProtKB/Swiss-Prot
    B2R6S5, B4DPU7, E9PGI8, P30085, Q53GB7, Q5SVZ0, Q96C07, Q9UBQ8, Q9UIA2
    UniProtKB/TrEMBL
    A0A8V8TMN5
    Related
    ENSP00000514114.1, ENST00000699075.1
    Conserved Domains (1) summary
    TIGR01359
    Location:5 → 193
    UMP_CMP_kin_fam; UMP-CMP kinase family

  3. NM_016308.3 → NP_057392.1  UMP-CMP kinase isoform a

    See identical proteins and their annotated locations for NP_057392.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
    Source sequence(s)
    AL513322, AL607122
    Consensus CDS
    CCDS549.1
    UniProtKB/TrEMBL
    A0A8V8TMN5
    Related
    ENSP00000360939.5, ENST00000371873.10
    Conserved Domains (2) summary
    cd01428
    Location:37 → 216
    ADK; Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for ...
    TIGR01359
    Location:37 → 225
    UMP_CMP_kin_fam; UMP-CMP kinase family

RNA

  1. NR_046394.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AL513322, AL607122

  2. NR_046395.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) contains an alternate 5' exon and uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because it lacks a large portion of the coding region, found in variant 1.
    Source sequence(s)
    AL513322, AL607122
    Related
    ENST00000471289.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    47333790..47378839
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    47212232..47257303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P30085.3 GenPept UniProtKB/Swiss-Prot:P30085

Gene LinkOut

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