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DEFB108D defensin beta 108D (pseudogene) [ Homo sapiens (human) ]

Gene ID: 504185, updated on 10-Oct-2023

Summary

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Official Symbol
DEFB108Dprovided by HGNC
Official Full Name
defensin beta 108D (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:26227
See related
AllianceGenome:HGNC:26227
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DEFB108P3
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Genomic context

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Location:
8p23.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (12095028..12099535, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (7634990..7639484)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (11952537..11957044, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene defensin beta 130B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:11946257-11946756 Neighboring gene RNA, 5S ribosomal pseudogene 253 Neighboring gene zinc finger protein 705D Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:11980151-11980651 Neighboring gene family with sequence similarity 66 member D Neighboring gene ubiquitin specific peptidase 17 like family member 2 pseudogene Neighboring gene ubiquitin specific peptidase 17 like family member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Duplication and selection in the evolution of primate beta-defensin genes. Semple CA, et al. Genome Biol, 2003. PMID 12734011, Free PMC Article
  2. Discovery of five conserved beta -defensin gene clusters using a computational search strategy. Schutte BC, et al. Proc Natl Acad Sci U S A, 2002 Feb 19. PMID 11854508, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • defensin beta 108 pseudogene 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007390.2 

    Range
    101..4608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    12095028..12099535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    7634990..7639484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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