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P2RY6 pyrimidinergic receptor P2Y6 [ Homo sapiens (human) ]

Gene ID: 5031, updated on 3-Apr-2024

Summary

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Official Symbol
P2RY6provided by HGNC
Official Full Name
pyrimidinergic receptor P2Y6provided by HGNC
Primary source
HGNC:HGNC:8543
See related
Ensembl:ENSG00000171631 MIM:602451; AllianceGenome:HGNC:8543
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
P2Y6
Summary
The product of this gene belongs to the family of P2 receptors, which is activated by extracellular nucleotides and subdivided into P2X ligand-gated ion channels and P2Y G-protein coupled receptors. This family has several receptor subtypes with different pharmacological selectivity, which overlaps in some cases, for various adenosine and uridine nucleotides. This receptor, which is a G-protein coupled receptor, is responsive to UDP, partially responsive to UTP and ADP, and not responsive to ATP. It is proposed that this receptor mediates inflammatory responses. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Mar 2013]
Expression
Biased expression in spleen (RPKM 4.4), placenta (RPKM 2.2) and 9 other tissues See more
Orthologs
mouse all
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Genomic context

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See P2RY6 in Genome Data Viewer
Location:
11q13.4
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (73264506..73298625)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (73193675..73227786)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (72975551..73009670)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:72959838-72961037 Neighboring gene uncharacterized LOC105369382 Neighboring gene olfactory receptor family 8 subfamily R member 1 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:72975095-72975632 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:72981035-72981828 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:72981829-72982621 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5232 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:73000363-73000929 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5233 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3737 Neighboring gene ARHGEF17 antisense RNA 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:73019433-73020310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:73020316-73021136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5234 Neighboring gene Rho guanine nucleotide exchange factor 17 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:73031799-73032452 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:73032453-73033105 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:73033106-73033758 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:73036372-73037023 Neighboring gene Sharpr-MPRA regulatory region 2623 Neighboring gene uncharacterized LOC124902710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:73044313-73045026

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. P2Y(6) receptor-dependent microglial phagocytosis of synapses mediates synaptic and memory loss in aging. Dundee JM, et al. Aging Cell, 2023 Feb. PMID 36565471, Free PMC Article
  2. Investigating the associations of mucosal P2Y6 receptor expression and urinary ATP and ADP concentrations, with symptoms of overactive bladder. Firouzmand S, et al. Neurourol Urodyn, 2020 Mar. PMID 32049380, Free PMC Article
  3. UDP/P2Y6 receptor signaling regulates IgE-dependent degranulation in human basophils. Nakano M, et al. Allergol Int, 2017 Oct. PMID 28318884
  4. Microglia P2Y6 receptor is related to Parkinson's disease through neuroinflammatory process. Yang X, et al. J Neuroinflammation, 2017 Feb 20. PMID 28219441, Free PMC Article
  5. P2Y6 receptor-mediated proinflammatory signaling in human bronchial epithelia. Hao Y, et al. PLoS One, 2014. PMID 25243587, Free PMC Article

See all (60) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Lipopolysaccharide-mediated ATP signaling regulates interleukin-6 mRNA expression via the P2-purinoceptor in human dental pulp cells.
    Title: Lipopolysaccharide-mediated ATP signaling regulates interleukin-6 mRNA expression via the P2-purinoceptor in human dental pulp cells.
  2. Macrophage P2Y6 receptor deletion attenuates atherosclerosis by limiting foam cell formation through phospholipase Cbeta/store-operated calcium entry/calreticulin/scavenger receptor A pathways.
    Title: Macrophage P2Y6 receptor deletion attenuates atherosclerosis by limiting foam cell formation through phospholipase Cβ/store-operated calcium entry/calreticulin/scavenger receptor A pathways.
  3. The role of P2Y6 receptor in the pathogenesis of cardiovascular and inflammatory diseases.
    Title: The role of P2Y(6) receptor in the pathogenesis of cardiovascular and inflammatory diseases.
  4. Immunological role and clinical prognostic significance of P2RY6 in lung adenocarcinoma: a multi-omics studies and single-cell sequencing analysis.
    Title: Immunological role and clinical prognostic significance of P2RY6 in lung adenocarcinoma: a multi-omics studies and single-cell sequencing analysis.
  5. Pyrimidinergic receptor P2Y6 expression is elevated in lung adenocarcinoma and is associated with poor prognosis.
    Title: Pyrimidinergic receptor P2Y6 expression is elevated in lung adenocarcinoma and is associated with poor prognosis.
  6. P2Y6 receptor-dependent microglial phagocytosis of synapses mediates synaptic and memory loss in aging.
    Title: P2Y(6) receptor-dependent microglial phagocytosis of synapses mediates synaptic and memory loss in aging.
  7. Purinergic Receptor P2Y6 Is a Negative Regulator of NK Cell Maturation and Function.
    Title: Purinergic Receptor P2Y(6) Is a Negative Regulator of NK Cell Maturation and Function.
  8. The P2Y6 receptor signals through Galphaq /Ca(2+) /PKCalpha and Galpha13 /ROCK pathways to drive the formation of membrane protrusions and dictate cell migration.
    Title: The P2Y(6) receptor signals through Gα(q) /Ca(2+) /PKCα and Gα(13) /ROCK pathways to drive the formation of membrane protrusions and dictate cell migration.
  9. Investigating the associations of mucosal P2Y6 receptor expression and urinary ATP and ADP concentrations, with symptoms of overactive bladder.
    Title: Investigating the associations of mucosal P2Y6 receptor expression and urinary ATP and ADP concentrations, with symptoms of overactive bladder.
  10. The expression of the P2Y6 receptor is regulated at the transcriptional level by p53.
    Title: The expression of the P2Y(6) receptor is regulated at the transcriptional level by p53.
Submit: New GeneRIF Correction See all GeneRIFs (45)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC15335

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables G protein-coupled ADP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables G protein-coupled ADP receptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables G protein-coupled UDP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables G protein-coupled UDP receptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables G protein-coupled UTP receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables G protein-coupled UTP receptor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables G protein-coupled receptor activity TAS
Traceable Author Statement
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled purinergic nucleotide receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in activation of phospholipase C activity TAS
Traceable Author Statement
more info
 PubMed 
involved_in cellular response to prostaglandin E stimulus IEA
Inferred from Electronic Annotation
more info
  
involved_in cellular response to purine-containing compound IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in cellular response to pyrimidine ribonucleotide IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cellular response to pyrimidine ribonucleotide IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in cellular response to pyrimidine ribonucleotide ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in phagocytosis ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in phospholipase C-activating G protein-coupled receptor signaling pathway IC
Inferred by Curator
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity TAS
Traceable Author Statement
more info
 PubMed 
involved_in positive regulation of inositol trisphosphate biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of inositol trisphosphate biosynthetic process TAS
Traceable Author Statement
more info
 PubMed 
involved_in positive regulation of smooth muscle cell migration IEA
Inferred from Electronic Annotation
more info
  
involved_in positive regulation of vascular associated smooth muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in transepithelial chloride transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IC
Inferred by Curator
more info
 PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
  

General protein information

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Preferred Names
P2Y purinoceptor 6
Names
G-coupled nucleotide receptor
P2 purinoceptor
P2Y6 receptor
pyrimidinergic receptor P2Y, G-protein coupled, 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277204.2 → NP_001264133.1  P2Y purinoceptor 6 isoform 1

    See identical proteins and their annotated locations for NP_001264133.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1,2,3,5,6,7, and 8 encode the same isoform (1).
    Source sequence(s)
    AF218005, BC009391, HY271000
    Consensus CDS
    CCDS8220.1
    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000442551.1, ENST00000540124.6
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

  2. NM_001277205.2 → NP_001264134.1  P2Y purinoceptor 6 isoform 1

    See identical proteins and their annotated locations for NP_001264134.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. Variants 1,2,3,5,6,7, and 8 encode the same isoform (1).
    Source sequence(s)
    AL525099, BC009391, BX397649, HY271000
    Consensus CDS
    CCDS8220.1
    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000445652.1, ENST00000542092.5
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

  3. NM_001277206.2 → NP_001264135.1  P2Y purinoceptor 6 isoform 1

    See identical proteins and their annotated locations for NP_001264135.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR compared to variant 1. Variants 1,2,3,5,6,7, and 8 encode the same isoform (1).
    Source sequence(s)
    AP002761, BC009391, BQ718871, HY271000
    Consensus CDS
    CCDS8220.1
    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000480966.1, ENST00000618468.5
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

  4. NM_001277207.2 → NP_001264136.1  P2Y purinoceptor 6 isoform 1

    See identical proteins and their annotated locations for NP_001264136.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8) differs in the 5' UTR compared to variant 1. Variants 1,2,3,5,6,7, and 8 encode the same isoform (1).
    Source sequence(s)
    AP002761, BC009391, BX337204, HY271000
    Consensus CDS
    CCDS8220.1
    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000504879.1, ENST00000679753.1
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

  5. NM_001277208.1 → NP_001264137.1  P2Y purinoceptor 6 isoform 2

    See identical proteins and their annotated locations for NP_001264137.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (9) contains an alternate 5'-most exon and initiates translation at an alternate start codon so that the 5' UTR and 5' coding region differ compared to variant 1. The encoded isoform (2) has a longer N-terminus than isoform 1.
    Source sequence(s)
    BC009391, DR004482, HY271000
    UniProtKB/Swiss-Prot
    Q15077
    Conserved Domains (1) summary
    pfam00001
    Location:145 → 401
    7tm_1; 7 transmembrane receptor (rhodopsin family)

  6. NM_176796.3 → NP_789766.1  P2Y purinoceptor 6 isoform 1

    See identical proteins and their annotated locations for NP_789766.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1,2,3,5,6,7, and 8 encode the same isoform (1).
    Source sequence(s)
    BC009391, BX381745, BX397649, HY271000
    Consensus CDS
    CCDS8220.1
    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000309771.2, ENST00000349767.6
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

  7. NM_176797.3 → NP_789767.1  P2Y purinoceptor 6 isoform 1

    See identical proteins and their annotated locations for NP_789767.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the shortest transcript. Variants 1,2,3,5,6,7, and 8 encode the same isoform (1).
    Source sequence(s)
    AF007891, BC009391, BX397649, HY271000
    Consensus CDS
    CCDS8220.1
    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000377217.2, ENST00000393592.7
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

  8. NM_176798.2 → NP_789768.1  P2Y purinoceptor 6 isoform 1

    See identical proteins and their annotated locations for NP_789768.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1,2,3,5,6,7, and 8 encode the same isoform (1).
    Source sequence(s)
    AF007892, BC009391, DR006998, HY271000
    Consensus CDS
    CCDS8220.1
    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000377216.1, ENST00000393591.5
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    73264506..73298625
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011545079.3 → XP_011543381.1  P2Y purinoceptor 6 isoform X3

    See identical proteins and their annotated locations for XP_011543381.1

    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000443427.1, ENST00000540342.6
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

  2. XM_047427038.1 → XP_047282994.1  P2Y purinoceptor 6 isoform X3

    UniProtKB/Swiss-Prot
    Q15077, Q15754

  3. XM_011545076.3 → XP_011543378.1  P2Y purinoceptor 6 isoform X1

    UniProtKB/TrEMBL
    A0A7P0TA46
    Conserved Domains (1) summary
    pfam00001
    Location:114 → 370
    7tm_1; 7 transmembrane receptor (rhodopsin family)

  4. XM_047427036.1 → XP_047282992.1  P2Y purinoceptor 6 isoform X2

  5. XM_047427037.1 → XP_047282993.1  P2Y purinoceptor 6 isoform X3

    UniProtKB/Swiss-Prot
    Q15077, Q15754

  6. XM_047427039.1 → XP_047282995.1  P2Y purinoceptor 6 isoform X3

    UniProtKB/Swiss-Prot
    Q15077, Q15754

  7. XM_006718571.4 → XP_006718634.1  P2Y purinoceptor 6 isoform X3

    See identical proteins and their annotated locations for XP_006718634.1

    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000442990.1, ENST00000538328.2
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

  8. XM_005274022.4 → XP_005274079.1  P2Y purinoceptor 6 isoform X3

    See identical proteins and their annotated locations for XP_005274079.1

    UniProtKB/Swiss-Prot
    Q15077, Q15754
    UniProtKB/TrEMBL
    A0A7P0TA46
    Related
    ENSP00000505646.1, ENST00000680955.1
    Conserved Domains (1) summary
    cd15379
    Location:27 → 312
    7tmA_P2Y6; P2Y purinoceptor 6, member of the class A family of seven-transmembrane G protein-coupled receptors

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    73193675..73227786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054369000.1 → XP_054224975.1  P2Y purinoceptor 6 isoform X3

    UniProtKB/Swiss-Prot
    Q15077, Q15754

  2. XM_054368998.1 → XP_054224973.1  P2Y purinoceptor 6 isoform X3

    UniProtKB/Swiss-Prot
    Q15077, Q15754

  3. XM_054368994.1 → XP_054224969.1  P2Y purinoceptor 6 isoform X1

  4. XM_054368995.1 → XP_054224970.1  P2Y purinoceptor 6 isoform X2

  5. XM_054368997.1 → XP_054224972.1  P2Y purinoceptor 6 isoform X3

    UniProtKB/Swiss-Prot
    Q15077, Q15754

  6. XM_054369001.1 → XP_054224976.1  P2Y purinoceptor 6 isoform X3

    UniProtKB/Swiss-Prot
    Q15077, Q15754

  7. XM_054368996.1 → XP_054224971.1  P2Y purinoceptor 6 isoform X3

    UniProtKB/Swiss-Prot
    Q15077, Q15754

  8. XM_054368999.1 → XP_054224974.1  P2Y purinoceptor 6 isoform X3

    UniProtKB/Swiss-Prot
    Q15077, Q15754

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_004154.3: Suppressed sequence

    Description
    NM_004154.3: This RefSeq was permanently suppressed because it contains the wrong CDS (incomplete at the 5' end).
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q15077.1 GenPept UniProtKB/Swiss-Prot:Q15077

Gene LinkOut

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