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SNX29P2 sorting nexin 29 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 440352, updated on 10-Oct-2023

Summary

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Official Symbol
SNX29P2provided by HGNC
Official Full Name
sorting nexin 29 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:31914
See related
AllianceGenome:HGNC:31914
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RUNDC2C
Expression
Biased expression in lymph node (RPKM 18.9), ovary (RPKM 5.9) and 8 other tissues See more
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Genomic context

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Location:
16p11.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (29302287..29365059)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (29584341..29647103)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (29313608..29376380)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903676 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:29276626-29276788 Neighboring gene uncharacterized LOC105371159 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:29296048-29296841 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:29296842-29297634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29297988-29298594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29298595-29299200 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29324515-29325223 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29330917-29331417 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29339867-29340728 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29340729-29341590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29393253-29393874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29393875-29394494 Neighboring gene nuclear pore complex interacting protein family member B11 Neighboring gene small nucleolar RNA U13 Neighboring gene SMG1 pseudogene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • RUN domain containing 2C

Clone Names

  • MGC52410

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002939.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025279, BC024293, BX648280

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    29302287..29365059
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    29584341..29647103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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