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LYPLA1P2 LYPLA1 pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 391686, updated on 10-Oct-2023

Summary

Official Symbol
LYPLA1P2provided by HGNC
Official Full Name
LYPLA1 pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:44006
See related
AllianceGenome:HGNC:44006
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
4q25
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (110944916..110945876, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (114246479..114247439, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (111866072..111867032, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900857 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:111614011-111614566 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72035 Neighboring gene VISTA enhancer hs930 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:111715278-111715811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21818 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:111797148-111797754 Neighboring gene microRNA 297 Neighboring gene uncharacterized LOC105377364 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:111985445-111986130 Neighboring gene NANOG hESC enhancer GRCh37_chr4:112130089-112130590 Neighboring gene RNA, U6 small nuclear 289, pseudogene

Genomic regions, transcripts, and products

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of medication adherence in chronic diseases in the korean population.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_022025.2 

    Range
    101..1061
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    110944916..110945876 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    114246479..114247439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)