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AQP7P1 aquaporin 7 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 375719, updated on 10-Oct-2023

Summary

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Official Symbol
AQP7P1provided by HGNC
Official Full Name
aquaporin 7 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:32048
See related
AllianceGenome:HGNC:32048
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
bA251O17.3
Expression
Biased expression in fat (RPKM 41.2) and heart (RPKM 2.7) See more
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Genomic context

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Location:
9q13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (63315243..63334520, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (77630960..77650247)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (67270215..67289492, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene Neighboring gene uncharacterized LOC105379814 Neighboring gene aquaporin 7 pseudogene 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:67068313-67068818 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:67284594-67285094 Neighboring gene methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene Neighboring gene Sharpr-MPRA regulatory region 10095 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:67317902-67318434 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:67320119-67320643 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:67320644-67321167 Neighboring gene MPRA-validated peak7251 silencer Neighboring gene formin-2-like Neighboring gene BMS1 pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Human aquaporin adipose (AQPap) gene. Genomic structure, promoter analysis and functional mutation. Kondo H, et al. Eur J Biochem, 2002 Apr. PMID 11952783
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002817.2 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AK128231, AL845321

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    63315243..63334520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    77630960..77650247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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