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IGKV1OR2-1 immunoglobulin kappa variable 1/OR2-1 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 3531, updated on 10-Oct-2023

Summary

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Official Symbol
IGKV1OR2-1provided by HGNC
Official Full Name
immunoglobulin kappa variable 1/OR2-1 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:5760
See related
Ensembl:ENSG00000235235 IMGT/GENE-DB:IGKV1/OR2-1; AllianceGenome:HGNC:5760
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IGKVPZ1; IGKV1OR1; IGKV1OR-1; IGKV1/OR-1; IGKV1/OR2-1
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Genomic context

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Location:
2p11.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (91817771..91818248)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (92007456..92007933)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (92005797..92006274)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene IGSF3 pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:91940319-91940818 Neighboring gene KMT5A pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr2:91973212-91973713 Neighboring gene gamma-glutamyltransferase 8 pseudogene Neighboring gene ATP binding cassette subfamily D member 1 pseudogene 5 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:92039806-92040306 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:92040307-92040807 Neighboring gene poly(A) binding protein cytoplasmic 1 pseudogene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Z family, a group of transposed human immunoglobulin V kappa genes. Straubinger B, et al. Gene, 1988 Sep 30. PMID 2853098

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • immunoglobulin kappa variable 1/OR-1 (pseudogene)
  • immunoglobulin kappa variable region pseudogene Z1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_078884.1 

    Range
    101..578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    91817771..91818248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    92007456..92007933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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