U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HTR7 5-hydroxytryptamine receptor 7 [ Homo sapiens (human) ]

Gene ID: 3363, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
HTR7provided by HGNC
Official Full Name
5-hydroxytryptamine receptor 7provided by HGNC
Primary source
HGNC:HGNC:5302
See related
Ensembl:ENSG00000148680 MIM:182137; AllianceGenome:HGNC:5302
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
5-HT7
Summary
The neurotransmitter, serotonin, is thought to play a role in various cognitive and behavioral functions. The serotonin receptor encoded by this gene belongs to the superfamily of G protein-coupled receptors and the gene is a candidate locus for involvement in autistic disorder and other neuropsychiatric disorders. Three splice variants have been identified which encode proteins that differ in the length of their carboxy terminal ends. [provided by RefSeq, Jul 2008]
Expression
Biased expression in testis (RPKM 6.1), urinary bladder (RPKM 2.0) and 8 other tissues See more
Orthologs
mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See HTR7 in Genome Data Viewer
Location:
10q23.31
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (90740823..90858039, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (91624488..91741713, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (92500580..92617796, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2653 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:92243978-92245177 Neighboring gene uncharacterized LOC124902478 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3755 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:92564844-92565562 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2600 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2601 Neighboring gene Sharpr-MPRA regulatory region 7939 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3757 Neighboring gene ribonuclease P/MRP subunit p30 Neighboring gene ankyrin repeat domain 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. 5-HT(7) receptors in Alzheimer's disease. Solas M, et al. Neurochem Int, 2021 Nov. PMID 34555475
  2. 5-HT7 receptors as a new target for prostate cancer physiopathology and treatment: an experimental study on PC-3 cells and FFPE tissues. Cinar I, et al. Naunyn Schmiedebergs Arch Pharmacol, 2021 Jun. PMID 33528589
  3. Role of the Serotonin Receptor 7 in Brain Plasticity: From Development to Disease. Crispino M, et al. Int J Mol Sci, 2020 Jan 13. PMID 31941109, Free PMC Article
  4. Role of 5-HT(7) receptors in the immune system in health and disease. Quintero-Villegas A, et al. Mol Med, 2019 Dec 31. PMID 31892309, Free PMC Article
  5. Improvising 5-HT(7)R homology model for design of high affinity ligands: model validation with docking, embrace minimization, MM-GBSA, and molecular dynamic simulations. Jha P, et al. J Biomol Struct Dyn, 2018 Aug. PMID 28745550

See all (70) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Serotonin 5-HT7 receptor is a biomarker poor prognostic factor and induces proliferation of triple-negative breast cancer cells through FOXM1.
    Title: Serotonin 5-HT7 receptor is a biomarker poor prognostic factor and induces proliferation of triple-negative breast cancer cells through FOXM1.
  2. 5-HT7 receptors in Alzheimer's disease.
    Title: 5-HT(7) receptors in Alzheimer's disease.
  3. 5-HT7 receptors as a new target for prostate cancer physiopathology and treatment: an experimental study on PC-3 cells and FFPE tissues.
    Title: 5-HT7 receptors as a new target for prostate cancer physiopathology and treatment: an experimental study on PC-3 cells and FFPE tissues.
  4. Effects of 5-HT7 receptors on circadian rhythm of mice anesthetized with isoflurane.
    Title: Effects of 5-HT7 receptors on circadian rhythm of mice anesthetized with isoflurane.
  5. Role of the Serotonin Receptor 7 in Brain Plasticity: From Development to Disease.
    Title: Role of the Serotonin Receptor 7 in Brain Plasticity: From Development to Disease.
  6. Stimulating DDX3 expression by serotonin 5-HT receptor 7 through phosphorylation of p53 via the AC-PKA-ERK signaling pathway.
    Title: Stimulating DDX3 expression by serotonin 5-HT receptor 7 through phosphorylation of p53 via the AC-PKA-ERK signaling pathway.
  7. 5-HT7 receptors are widely expressed in a vast repertoire of immune and non-immune cells. The receptor has diverse -and even discrepant- roles in the immune response. [review]
    Title: Role of 5-HT(7) receptors in the immune system in health and disease.
  8. MiRNA-29a is upregulated in and HTR7 is downregulated in irritable bowel syndrome (IBS). HTR7 is a direct target of miRNA-29a. MiRNA-29a plays a role in visceral hyperalgesia pathogenesis of IBS.
    Title: MiRNA-29a modulates visceral hyperalgesia in irritable bowel syndrome by targeting HTR7.
  9. the impact of template choice, alignment, and model building methods on the homology model of 5-HT7R is addressed.
    Title: Improvising 5-HT(7)R homology model for design of high affinity ligands: model validation with docking, embrace minimization, MM-GBSA, and molecular dynamic simulations.
  10. zinc can act as a negative allosteric inhibitor of 5-HT7 receptors.
    Title: Allosteric Inhibition of Serotonin 5-HT(7) Receptors by Zinc Ions.
Submit: New GeneRIF Correction See all GeneRIFs (43)

Phenotypes

Go to the top of the page Help

Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Common genetic variants and gene expression associated with white matter microstructure in the human brain.
EBI GWAS Catalog

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables G protein-coupled serotonin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables neurotransmitter receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in G protein-coupled serotonin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
involved_in blood circulation TAS
Traceable Author Statement
more info
 PubMed 
involved_in chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
  
involved_in smooth muscle contraction IEA
Inferred from Electronic Annotation
more info
  
involved_in vasoconstriction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in dendrite IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane TAS
Traceable Author Statement
more info
  
located_in synapse IEA
Inferred from Electronic Annotation
more info
  
located_in trans-Golgi network membrane TAS
Traceable Author Statement
more info
  

General protein information

Go to the top of the page Help
Preferred Names
5-hydroxytryptamine receptor 7
Names
5-HT-7
5-HT-X
5-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029218.1 RefSeqGene

    Range
    4876..122092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_000872.5 → NP_000863.1  5-hydroxytryptamine receptor 7 isoform a

    See identical proteins and their annotated locations for NP_000863.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (a) results from the alternative usage of the first of two tandemly arranged splice donor sites at the 5' end of intron 2, which causes the protein to have a 13 amino acid longer carboxy tail relative to isoform b.
    Source sequence(s)
    AL360011, BC047526, BG108256
    Consensus CDS
    CCDS7409.1
    UniProtKB/Swiss-Prot
    P34969
    Related
    ENSP00000277874.6, ENST00000277874.10
    Conserved Domains (1) summary
    cd15329
    Location:97 → 395
    7tmA_5-HT7; serotonin receptor subtype 7, member of the class A family of seven-transmembrane G protein-coupled receptors

  2. NM_019859.4 → NP_062873.1  5-hydroxytryptamine receptor 7 isoform d

    See identical proteins and their annotated locations for NP_062873.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (d) results from the inclusion of a 98 base pair exon cassette (exon D) at the exon II/exon III boundary, as compared to splice variant a. The inclusion of exon D results in a protein with a carboxy terminal end 34 amino acids longer than the splice variant a protein.
    Source sequence(s)
    AL360011, BC047526, BG108256, U68488
    Consensus CDS
    CCDS7408.1
    UniProtKB/Swiss-Prot
    B5BUP6, P34969, P78336, P78372, P78516, Q5VX01, Q5VX02, Q5VX03
    Related
    ENSP00000337949.3, ENST00000336152.8
    Conserved Domains (2) summary
    pfam00001
    Location:98 → 384
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:98 → 215
    7tm_4; Olfactory receptor

  3. NM_019860.4 → NP_062874.1  5-hydroxytryptamine receptor 7 isoform b

    See identical proteins and their annotated locations for NP_062874.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (b) results from the alternative usage of the second of the two tandemly arranged splice donor sites at the 5' end of intron 2, which causes an in-frame stop codon and shortens the protein's carboxy tail by 13 amino acids relative to isoform a.
    Source sequence(s)
    AL360011, BC047526, BG108256, U68487
    Consensus CDS
    CCDS7410.1
    UniProtKB/Swiss-Prot
    P34969
    Related
    ENSP00000360784.2, ENST00000371719.2
    Conserved Domains (1) summary
    cd15329
    Location:97 → 395
    7tmA_5-HT7; serotonin receptor subtype 7, member of the class A family of seven-transmembrane G protein-coupled receptors

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    90740823..90858039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024447973.2 → XP_024303741.1  5-hydroxytryptamine receptor 7 isoform X1

    Conserved Domains (2) summary
    cd15329
    Location:3 → 19
    7tmA_5-HT7; TM helix 4 [structural motif]
    cl28897
    Location:1 → 197
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    91624488..91741713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054365712.1 → XP_054221687.1  5-hydroxytryptamine receptor 7 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34969.2 GenPept UniProtKB/Swiss-Prot:P34969

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous