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HLA-DRB7 major histocompatibility complex, class II, DR beta 7 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 3129, updated on 11-Nov-2023

Summary

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Official Symbol
HLA-DRB7provided by HGNC
Official Full Name
major histocompatibility complex, class II, DR beta 7 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:4955
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Annotation information
Annotation category: only annotated on alternate loci in reference assembly
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Genomic context

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See HLA-DRB7 in Genome Data Viewer
Location:
6p21.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 (ALT_REF_LOCI_3) NT_167245.2 (3770665..3789002)
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 (ALT_REF_LOCI_4) NT_167246.2 (3946223..3964587)
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 (ALT_REF_LOCI_7) NT_167249.2 (3935314..3954816, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 Unlocalized Scaffold (ALT_REF_LOCI_3) NT_167245.1 (3776250..3794587)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 Unlocalized Scaffold (ALT_REF_LOCI_4) NT_167246.1 (3951843..3970207)

NT_167245.2Genomic Context describing neighboring genes Neighboring gene major histocompatibility complex, class II, DR alpha Neighboring gene MPRA-validated peak5756 silencer Neighboring gene protein FAM136A-like Neighboring gene HLA class II histocompatibility antigen, DR beta 4 chain-like Neighboring gene major histocompatibility complex, class II, DR beta 1 Neighboring gene major histocompatibility complex, class II, DQ alpha 1

NT_167246.2Genomic Context describing neighboring genes Neighboring gene HLA class II histocompatibility antigen, DR beta 4 chain-like Neighboring gene protein FAM136A-like Neighboring gene protein activator of interferon induced protein kinase EIF2AK2 pseudogene 1 Neighboring gene major histocompatibility complex, class II, DR beta 1 Neighboring gene major histocompatibility complex, class II, DQ alpha 1

NT_167249.2Genomic Context describing neighboring genes Neighboring gene protein FAM136A-like Neighboring gene protein activator of interferon induced protein kinase EIF2AK2 pseudogene 1 Neighboring gene family with sequence similarity 8 member A5, pseudogene Neighboring gene major histocompatibility complex, class II, DR beta 1 Neighboring gene major histocompatibility complex, class II, DQ alpha 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of an HLA DR beta pseudogene. Larhammar D, et al. Proc Natl Acad Sci U S A, 1985 Mar. PMID 3856276, Free PMC Article
  2. Variation analysis and gene annotation of eight MHC haplotypes: the MHC Haplotype Project. Horton R, et al. Immunogenetics, 2008 Jan. PMID 18193213, Free PMC Article
  3. Transduction of the human gene FAM8A1 by endogenous retrovirus during primate evolution. Jamain S, et al. Genomics, 2001 Nov. PMID 11707071
  4. Nomenclature for factors of the HLA system, 1991. WHO Nomenclature Committee for factors of the HLA system. Bodmer JG, et al. Tissue Antigens, 1992 Apr. PMID 1529427
  5. Initial sequencing and analysis of the human genome. Lander ES, et al. Nature, 2001 Feb 15. PMID 11237011

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_056117.1 

    Range
    101..18438
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 ALT_REF_LOCI_3

Genomic

  1. NT_167245.2 Reference GRCh38.p14 ALT_REF_LOCI_3

    Range
    3770665..3789002
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_4

Genomic

  1. NT_167246.2 Reference GRCh38.p14 ALT_REF_LOCI_4

    Range
    3946223..3964587
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_7

Genomic

  1. NT_167249.2 Reference GRCh38.p14 ALT_REF_LOCI_7

    Range
    3935314..3954816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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