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RGCC regulator of cell cycle [ Homo sapiens (human) ]

Gene ID: 28984, updated on 5-Mar-2024

Summary

Official Symbol
RGCCprovided by HGNC
Official Full Name
regulator of cell cycleprovided by HGNC
Primary source
HGNC:HGNC:20369
See related
Ensembl:ENSG00000102760 MIM:610077; AllianceGenome:HGNC:20369
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RGC32; RGC-32; C13orf15; bA157L14.2
Summary
This gene is thought to regulate cell cycle progression. It is induced by p53 in response to DNA damage, or by sublytic levels of complement system proteins that result in activation of the cell cycle. The encoded protein localizes to the cytoplasm during interphase and to centrosomes during mitosis. The protein forms a complex with polo-like kinase 1. The protein also translocates to the nucleus in response to treatment with complement system proteins, and can associate with and increase the kinase activity of cell division cycle 2 protein. In different assays and cell types, overexpression of this protein has been shown to activate or suppress cell cycle progression. [provided by RefSeq, Jul 2008]
Expression
Biased expression in bone marrow (RPKM 99.1), lung (RPKM 65.2) and 11 other tissues See more
Orthologs
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Genomic context

Location:
13q14.11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (41457550..41470871)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (40676691..40689978)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (42031686..42045007)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:42031872-42032549 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7629 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7631 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:42038640-42038854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7632 Neighboring gene olfactory receptor family 7 subfamily E member 155 pseudogene Neighboring gene olfactory receptor family 7 subfamily E member 37 pseudogene Neighboring gene uncharacterized LOC105370174 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_32874 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr13:42114123-42114643 Neighboring gene uncharacterized LOC105370175 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:42127997-42128188 Neighboring gene microRNA 5006 Neighboring gene von Willebrand factor A domain containing 8

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
EBI GWAS Catalog
Meta-analysis of genome-wide association studies identifies six new Loci for serum calcium concentrations.
EBI GWAS Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • KIAA0564, MGC87338

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables R-SMAD binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein kinase activator activity IDA
Inferred from Direct Assay
more info
PubMed 
enables protein kinase binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein kinase binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in cell cycle IEA
Inferred from Electronic Annotation
more info
 
involved_in cellular response to hypoxia IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in complement activation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in fibroblast activation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in negative regulation of angiogenesis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of blood vessel endothelial cell migration IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of cell population proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of cell-cell adhesion mediated by cadherin IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of cytokine production IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of endothelial cell proliferation IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of exit from mitosis IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of fibroblast growth factor production IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of mitotic cell cycle phase transition IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of DNA biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of DNA-binding transcription factor activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of G1/S transition of mitotic cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of collagen biosynthetic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cytokine production IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of endothelial cell apoptotic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of epithelial to mesenchymal transition IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of epithelial to mesenchymal transition IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of extracellular matrix assembly IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of extracellular matrix constituent secretion IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of mitotic nuclear division IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of stress fiber assembly IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in centrosome IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in nucleolus IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
regulator of cell cycle RGCC
Names
response gene to complement 32 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014059.3NP_054778.2  regulator of cell cycle RGCC

    See identical proteins and their annotated locations for NP_054778.2

    Status: REVIEWED

    Source sequence(s)
    BC066334, DB451897
    Consensus CDS
    CCDS41880.1
    UniProtKB/Swiss-Prot
    Q6NZ48, Q9H4X1, Q9UL69
    Related
    ENSP00000368664.3, ENST00000379359.4
    Conserved Domains (1) summary
    pfam15151
    Location:26137
    RGCC; Response gene to complement 32 protein family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    41457550..41470871
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047430282.1XP_047286238.1  regulator of cell cycle RGCC isoform X1

RNA

  1. XR_941565.2 RNA Sequence

  2. XR_007063677.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    40676691..40689978
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054374480.1XP_054230455.1  regulator of cell cycle RGCC isoform X1

RNA

  1. XR_008488757.1 RNA Sequence

  2. XR_008488756.1 RNA Sequence