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LY6S-AS1 LY6S antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 286122, updated on 8-Nov-2023

Summary

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Official Symbol
LY6S-AS1provided by HGNC
Official Full Name
LY6S antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:26731
See related
Ensembl:ENSG00000177335 AllianceGenome:HGNC:26731
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C8orf31; LINC02904
Expression
Broad expression in thyroid (RPKM 1.1), adrenal (RPKM 1.1) and 20 other tissues See more
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Genomic context

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Location:
8q24.3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (143039209..143054303)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (144183089..144198326)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (144120626..144135720)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:144104683-144105446 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:144105447-144106208 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:144106209-144106972 Neighboring gene lymphocyte antigen 6 family member E Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:144107735-144108497 Neighboring gene uncharacterized LOC124902034 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:144116775-144117420 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:144120298-144120849 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:144122871-144123446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:144124023-144124598 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:144126601-144127213 Neighboring gene lymphocyte antigen 6 family member S Neighboring gene AK3 pseudogene 2 Neighboring gene ribosomal protein S26 pseudogene 36

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Mammalian APE1 controls miRNA processing and its interactome is linked to cancer RNA metabolism. Antoniali G, et al. Nat Commun, 2017 Oct 6. PMID 28986522, Free PMC Article
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • long intergenic non-protein coding RNA 2904
  • uncharacterized protein C8orf31

Clone Names

  • FLJ37131, MGC90155

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126398.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK094450, BC073830, BC120993, DB260703

  2. NR_126399.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK094450, BC063497, BC120993, DB260703
    Related
    ENST00000517653.5

  3. NR_149322.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC083982, AK094450, DB260703
    Related
    ENST00000395172.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    143039209..143054303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187573.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    29497..44591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    144183089..144198326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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