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ZNF615 zinc finger protein 615 [ Homo sapiens (human) ]

Gene ID: 284370, updated on 5-Mar-2024

Summary

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Official Symbol
ZNF615provided by HGNC
Official Full Name
zinc finger protein 615provided by HGNC
Primary source
HGNC:HGNC:24740
See related
Ensembl:ENSG00000197619 AllianceGenome:HGNC:24740
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in prostate (RPKM 9.4), thyroid (RPKM 3.7) and 24 other tissues See more
Orthologs
all
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Genomic context

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Location:
19q13.41
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (51991332..52008211, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (55078529..55095409, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (52494585..52511464, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 613 Neighboring gene ZNF350 antisense RNA 1 Neighboring gene zinc finger protein 350 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:52489558-52490433 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15032 Neighboring gene uncharacterized LOC124904755 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15033 Neighboring gene zinc finger protein 614 Neighboring gene uncharacterized LOC112268244 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:52530119-52530889 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15034

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. ARHGAP24 represses β-catenin transactivation-induced invasiveness in hepatocellular carcinoma mainly by acting as a GTPase-independent scaffold. Yang W, et al. Theranostics, 2022. PMID 36168627, Free PMC Article
  2. Cullin 3 Exon 9 Deletion in Familial Hyperkalemic Hypertension Impairs Cullin3-Ring-E3 Ligase (CRL3) Dynamic Regulation and Cycling. Kouranti I, et al. Int J Mol Sci, 2022 May 5. PMID 35563538, Free PMC Article
  3. VIRMA mediates preferential m(6)A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. Yue Y, et al. Cell Discov, 2018. PMID 29507755, Free PMC Article
  4. A proximity-dependent biotinylation map of a human cell. Go CD, et al. Nature, 2021 Jul. PMID 34079125
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ33710, FLJ39372, DKFZp686O1554

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 615

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199324.2 → NP_001186253.1  zinc finger protein 615 isoform 1

    See identical proteins and their annotated locations for NP_001186253.1

    Status: VALIDATED

    Source sequence(s)
    AC011460, BC053884, BC112961, BX647556, DA095942
    Consensus CDS
    CCDS59418.1
    UniProtKB/Swiss-Prot
    Q8N8J6
    Related
    ENSP00000471041.1, ENST00000598071.6
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:325 → 729
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:413 → 433
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:426 → 449
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001321317.2 → NP_001308246.1  zinc finger protein 615 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC011460, AK294977, BC053884, BX647556
    Consensus CDS
    CCDS82387.1
    UniProtKB/TrEMBL
    H9KV89
    Related
    ENSP00000375672.3, ENST00000391795.7
    Conserved Domains (5) summary
    smart00349
    Location:13 → 73
    KRAB; krueppel associated box
    COG5048
    Location:319 → 723
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:407 → 427
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:13 → 52
    KRAB; KRAB box
    pfam13465
    Location:420 → 443
    zf-H2C2_2; Zinc-finger double domain

  3. NM_001321318.2 → NP_001308247.1  zinc finger protein 615 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC011460, AC011468, AK128361, BX647556
    UniProtKB/Swiss-Prot
    Q8N8J6
    Conserved Domains (5) summary
    smart00349
    Location:4 → 64
    KRAB; krueppel associated box
    COG5048
    Location:321 → 725
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:4 → 43
    KRAB; KRAB box
    pfam13465
    Location:422 → 445
    zf-H2C2_2; Zinc-finger double domain

  4. NM_001321319.2 → NP_001308248.1  zinc finger protein 615 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC011460, AC011468, BC112961, BX647556
    Consensus CDS
    CCDS59418.1
    UniProtKB/Swiss-Prot
    Q8N8J6
    Related
    ENSP00000471549.1, ENST00000594083.5
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:325 → 729
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:413 → 433
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:426 → 449
    zf-H2C2_2; Zinc-finger double domain

  5. NM_001321320.2 → NP_001308249.1  zinc finger protein 615 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC011460, AC011468, BX647556, DA119086, DB235427, DB290987
    Consensus CDS
    CCDS12846.1
    UniProtKB/Swiss-Prot
    B7ZKW9, Q2M2Y6, Q5CZB0, Q6ZMT7, Q6ZRB3, Q8N8J6
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:314 → 718
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:402 → 422
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:415 → 438
    zf-H2C2_2; Zinc-finger double domain

  6. NM_001321321.2 → NP_001308250.1  zinc finger protein 615 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC011460, AC011468, BX647556, DA322276, DA802380
    Consensus CDS
    CCDS59418.1
    UniProtKB/Swiss-Prot
    Q8N8J6
    Related
    ENSP00000483676.1, ENST00000618487.4
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:325 → 729
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:413 → 433
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:426 → 449
    zf-H2C2_2; Zinc-finger double domain

  7. NM_001321322.2 → NP_001308251.1  zinc finger protein 615 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC011460, BX647556, DA322276
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:321 → 725
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:409 → 429
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:422 → 445
    zf-H2C2_2; Zinc-finger double domain

  8. NM_001321323.2 → NP_001308252.1  zinc finger protein 615 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC011460, BX647556, DA240372
    Conserved Domains (5) summary
    smart00349
    Location:13 → 73
    KRAB; krueppel associated box
    COG5048
    Location:330 → 734
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:418 → 438
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:13 → 52
    KRAB; KRAB box
    pfam13465
    Location:431 → 454
    zf-H2C2_2; Zinc-finger double domain

  9. NM_198480.4 → NP_940882.3  zinc finger protein 615 isoform 2

    See identical proteins and their annotated locations for NP_940882.3

    Status: VALIDATED

    Source sequence(s)
    AC011460, AK094071, BC105100, BX647556, DA236166, DA244381
    Consensus CDS
    CCDS12846.1
    UniProtKB/Swiss-Prot
    B7ZKW9, Q2M2Y6, Q5CZB0, Q6ZMT7, Q6ZRB3, Q8N8J6
    Related
    ENSP00000365906.4, ENST00000376716.9
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:314 → 718
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:402 → 422
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:415 → 438
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    51991332..52008211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047438647.1 → XP_047294603.1  zinc finger protein 615 isoform X1

  2. XM_017026648.3 → XP_016882137.1  zinc finger protein 615 isoform X2

    UniProtKB/Swiss-Prot
    B7ZKW9, Q2M2Y6, Q5CZB0, Q6ZMT7, Q6ZRB3, Q8N8J6
    Conserved Domains (5) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:314 → 718
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:402 → 422
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:415 → 438
    zf-H2C2_2; Zinc-finger double domain

  3. XM_047438644.1 → XP_047294600.1  zinc finger protein 615 isoform X1

  4. XM_047438645.1 → XP_047294601.1  zinc finger protein 615 isoform X1

  5. XM_047438646.1 → XP_047294602.1  zinc finger protein 615 isoform X1

  6. XM_047438648.1 → XP_047294604.1  zinc finger protein 615 isoform X3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    55078529..55095409 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054320646.1 → XP_054176621.1  zinc finger protein 615 isoform X1

  2. XM_054320647.1 → XP_054176622.1  zinc finger protein 615 isoform X2

    UniProtKB/Swiss-Prot
    B7ZKW9, Q2M2Y6, Q5CZB0, Q6ZMT7, Q6ZRB3, Q8N8J6

  3. XM_054320643.1 → XP_054176618.1  zinc finger protein 615 isoform X1

  4. XM_054320644.1 → XP_054176619.1  zinc finger protein 615 isoform X1

  5. XM_054320645.1 → XP_054176620.1  zinc finger protein 615 isoform X1

  6. XM_054320648.1 → XP_054176623.1  zinc finger protein 615 isoform X3

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8N8J6.2 GenPept UniProtKB/Swiss-Prot:Q8N8J6

Gene LinkOut

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