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KRT42P keratin 42, pseudogene [ Homo sapiens (human) ]

Gene ID: 284116, updated on 10-Oct-2023

Summary

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Official Symbol
KRT42Pprovided by HGNC
Official Full Name
keratin 42, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:27581
See related
Ensembl:ENSG00000290861 AllianceGenome:HGNC:27581
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
17q21.2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (41626327..41640199, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (42481780..42496639, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (39782579..39796451, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39770050-39770598 Neighboring gene keratin 16 Neighboring gene keratin 17 Neighboring gene uncharacterized LOC124904004 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39803627-39804502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12166 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39809802-39810500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39810501-39811197 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39816537-39817036 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39821445-39821964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:39821965-39822482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12168 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12169 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12170 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8497 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:39844838-39845746 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:39845747-39846655 Neighboring gene eukaryotic translation initiation factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The human type I keratin gene family: characterization of new hair follicle specific members and evaluation of the chromosome 17q21.2 gene domain. Rogers MA, et al. Differentiation, 2004 Dec. PMID 15617563
  2. New consensus nomenclature for mammalian keratins. Schweizer J, et al. J Cell Biol, 2006 Jul 17. PMID 16831889, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033415.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC130686, AK125965
    Related
    ENST00000398469.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    41626327..41640199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    42481780..42496639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006516.1: Suppressed sequence

    Description
    NG_006516.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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