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IGHV5-78 immunoglobulin heavy variable 5-78 (pseudogene) [ Homo sapiens (human) ]

Gene ID: 28387, updated on 8-Nov-2023

Summary

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Official Symbol
IGHV5-78provided by HGNC
Official Full Name
immunoglobulin heavy variable 5-78 (pseudogene)provided by HGNC
Primary source
HGNC:HGNC:5660
See related
Ensembl:ENSG00000211978 IMGT/GENE-DB:IGHV5-78; AllianceGenome:HGNC:5660
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
VH5; 5-78P; IGHV578
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Genomic context

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See IGHV5-78 in Genome Data Viewer
Location:
14q32.33
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (106851112..106851546, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (101126406..101126840, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (107259327..107259761, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene immunoglobulin heavy locus Neighboring gene immunoglobulin heavy variable (III)-76-1 (pseudogene) Neighboring gene uncharacterized LOC124903399 Neighboring gene immunoglobulin heavy variable (II)-78-1 (pseudogene) Neighboring gene immunoglobulin heavy variable 3-79 (pseudogene) Neighboring gene microRNA 5195

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure and expression of human germline VH transcripts. Berman JE, et al. J Exp Med, 1991 Jun 1. PMID 1903431, Free PMC Article
  2. Molecular cloning and characterization of the t(2;14) translocation associated with childhood chronic lymphocytic leukemia. Richardson AL, et al. Oncogene, 1992 May. PMID 1373880
  3. Content and organization of the human Ig VH locus: definition of three new VH families and linkage to the Ig CH locus. Berman JE, et al. EMBO J, 1988 Mar. PMID 3396540, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Markers

Clone Names

  • MGC3963

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001019.6 

    Range
    28799..29233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    106851112..106851546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187600.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    1342286..1342720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    101126406..101126840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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