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SNORD55 small nucleolar RNA, C/D box 55 [ Homo sapiens (human) ]

Gene ID: 26811, updated on 10-Oct-2023

Summary

Official Symbol
SNORD55provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 55provided by HGNC
Primary source
HGNC:HGNC:10205
See related
Ensembl:ENSG00000264294 AllianceGenome:HGNC:10205
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U39; U55; RNU39; RNU55; SNORD39
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Genomic context

Location:
1p34.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (44775865..44775938)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (44646854..44646927)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (45241537..45241610)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 12642 Neighboring gene RNA, U5D small nuclear 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:45200330-45200889 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 943 Neighboring gene kinesin family member 2C Neighboring gene ATAC-STARR-seq lymphoblastoid active region 944 Neighboring gene small nucleolar RNA, C/D box 160 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 817 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 945 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:45243410-45243921 Neighboring gene small nucleolar RNA, C/D box 46 Neighboring gene small nucleolar RNA, C/D box 38A Neighboring gene ribosomal protein S8

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • RNA, U39 small nucleolar
  • RNA, U55 small nuclear
  • U39 small nucleolar RNA
  • U39 snoRNA
  • small nucleolar RNA, C/D box 39

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_000015.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    X96654
    Related
    ENST00000581525.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    44775865..44775938
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    44646854..44646927
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)