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TFAMP2 transcription factor A, mitochondrial pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 260340, updated on 10-Oct-2023

Summary

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Official Symbol
TFAMP2provided by HGNC
Official Full Name
transcription factor A, mitochondrial pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:11638
See related
AllianceGenome:HGNC:11638
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MTTF1; TCF6L3
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Genomic context

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Location:
11q22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (109905902..109907879, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (109916206..109918183, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (109776628..109778605, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2715 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:109730175-109731374 Neighboring gene uncharacterized LOC105369483 Neighboring gene NANOG hESC enhancer GRCh37_chr11:109734840-109735483 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5494 Neighboring gene uncharacterized LOC105369484 Neighboring gene ribosomal protein SA pseudogene 50

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Human mitochondrial transcription factor A (mtTFA): gene structure and characterization of related pseudogenes. Reyes A, et al. Gene, 2002 May 29. PMID 12095695

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • processed pseudogene mtTFA 2
  • transcription factor 6-like 3 (mitochondrial transcription factor 1-like)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007345.4 

    Range
    101..2078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    109905902..109907879 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    109916206..109918183 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_001287.1: Suppressed sequence

    Description
    NR_001287.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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