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XPOTP1 exportin for tRNA pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 170559, updated on 10-Oct-2023

Summary

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Official Symbol
XPOTP1provided by HGNC
Official Full Name
exportin for tRNA pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:16586
See related
Ensembl:ENSG00000214185 AllianceGenome:HGNC:16586
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
XPO3P1; dJ785G19.1
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Genomic context

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Location:
20q11.22
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (34213486..34216093, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (35939878..35942485, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (32801292..32803899, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:32698990-32699652 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:32699653-32700314 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17755 Neighboring gene eukaryotic translation initiation factor 2 subunit beta Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12832 Neighboring gene Sharpr-MPRA regulatory region 7536 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:32731215-32731715 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:32741705-32742632 Neighboring gene ribosomal protein S2 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr20:32819632-32820133 Neighboring gene agouti signaling protein Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17756 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17757 Neighboring gene NANOG hESC enhancer GRCh37_chr20:32830321-32830822 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17758 Neighboring gene adenosylhomocysteinase Neighboring gene DENR pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12833 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17759 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17760 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:32899404-32900002 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:32916560-32916775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17761 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17762 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:32932123-32932286 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12834 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17764 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:32983653-32983754 Neighboring gene itchy E3 ubiquitin protein ligase Neighboring gene CDC42 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • exportin, tRNA (nuclear export receptor for tRNAs) pseudogene 1
  • exportin, tRNA pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001062.3 

    Range
    1..2608
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    34213486..34216093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    35939878..35942485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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