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LOC127890195 H3K4me1 hESC enhancer GRCh37_chr19:5338211-5338884 [ Homo sapiens (human) ]

Gene ID: 127890195, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127890195
Gene description
H3K4me1 hESC enhancer GRCh37_chr19:5338211-5338884
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Dec 2022]
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Genomic context

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Location:
chromosome: 19
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (5338200..5338873)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (5324813..5325486)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type S Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9922 Neighboring gene uncharacterized LOC105372253 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:5294563-5295180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:5295181-5295797 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:5298210-5298710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:5301231-5301731 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:5319701-5320202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:5320203-5320702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13800 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13802 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13801 Neighboring gene uncharacterized LOC105372252 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9923 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:5364893-5365392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:5395257-5395803 Neighboring gene Sharpr-MPRA regulatory region 11104 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_51701 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:5477057-5477274 Neighboring gene uncharacterized LOC124904622 Neighboring gene zinc and ring finger 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_147899.1 

    Range
    101..774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    5338200..5338873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    5324813..5325486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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