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LOC127820097 H3K4me1 hESC enhancer GRCh37_chr11:1319647-1320378 [ Homo sapiens (human) ]

Gene ID: 127820097, updated on 10-Oct-2023

Summary

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Gene symbol
LOC127820097
Gene description
H3K4me1 hESC enhancer GRCh37_chr11:1319647-1320378
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in primed human embryonic stem cells. This enhancer is marked by the H3K4me1 histone modification. [provided by RefSeq, Nov 2022]
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Genomic context

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See LOC127820097 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (1298417..1299148)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (1370011..1370742)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene mucin 5B, oligomeric mucus/gel-forming Neighboring gene MUC5B antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3050 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:1283433-1283938 Neighboring gene microRNA 6744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4288 Neighboring gene toll interacting protein Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1320379-1321110 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1323133-1323656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1323657-1324180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:1324181-1324704 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3052 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:1331258-1332019 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3053 Neighboring gene TOLLIP divergent transcript Neighboring gene uncharacterized LOC124902606

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_121563.1 

    Range
    101..832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    1298417..1299148
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791792.1 Reference GRCh38.p14 PATCHES

    Range
    32683..33414
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    1370011..1370742
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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