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ENTREP3 endosomal transmembrane epsin interactor 3 [ Homo sapiens (human) ]

Gene ID: 10712, updated on 5-Mar-2024

Summary

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Official Symbol
ENTREP3provided by HGNC
Official Full Name
endosomal transmembrane epsin interactor 3provided by HGNC
Primary source
HGNC:HGNC:1233
See related
Ensembl:ENSG00000160767 MIM:619447; AllianceGenome:HGNC:1233
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
COTE1; C1orf2; FAM189B
Summary
This gene is located near the gene for the lysosomal enzyme glucosylceramidase; a deficiency in this enzyme is associated with Gaucher disease. The encoded protein has been identified as a potential binding partner of a WW domain-containing protein which is involved in apoptosis and tumor suppression. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2010]
Expression
Ubiquitous expression in fat (RPKM 4.9), testis (RPKM 4.8) and 25 other tissues See more
Orthologs
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Genomic context

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Location:
1q22
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (155247205..155255483, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (154385763..154394041, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (155216996..155225274, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene GBA recombination region Neighboring gene metaxin 1 like, pseudogene Neighboring gene glucosylceramidase beta 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:155213585-155214548 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:155219706-155220308 Neighboring gene secretory carrier membrane protein 3 Neighboring gene CDC like kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. High FAM189B Expression and Its Prognostic Value in Patients with Gastric Cancer. Wu CL, et al. Biomed Res Int, 2021. PMID 34124264, Free PMC Article
  2. Upregulation of the putative oncogene COTE1 contributes to human hepatocarcinogenesis through modulation of WWOX signaling. Zhang H, et al. Int J Oncol, 2014 Aug. PMID 24899407
  3. Ectopic overexpression of COTE1 promotes cellular invasion of hepatocellular carcinoma. Zhang H, et al. Asian Pac J Cancer Prev, 2012. PMID 23317259
  4. SREBP-1 regulates the expression of heme oxygenase 1 and the phosphatidylinositol-3 kinase regulatory subunit p55 gamma. Kallin A, et al. J Lipid Res, 2007 Jul. PMID 17452746
  5. Identification of three additional genes contiguous to the glucocerebrosidase locus on chromosome 1q21: implications for Gaucher disease. Winfield SL, et al. Genome Res, 1997 Oct. PMID 9331372, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. COTE1 Facilitates Intrahepatic Cholangiocarcinoma Progression via Beclin1-Dependent Autophagy Inhibition.
    Title: COTE1 Facilitates Intrahepatic Cholangiocarcinoma Progression via Beclin1-Dependent Autophagy Inhibition.
  2. COTE-1 promotes the proliferation and invasion of small cell lung cancer by regulating autophagy activity via the AMPK/mTOR signaling pathway.
    Title: COTE-1 promotes the proliferation and invasion of small cell lung cancer by regulating autophagy activity via the AMPK/mTOR signaling pathway.
  3. High FAM189B Expression and Its Prognostic Value in Patients with Gastric Cancer.
    Title: High FAM189B Expression and Its Prognostic Value in Patients with Gastric Cancer.
  4. our findings suggest that the cytoplasmic protein COTE1 contributes to hepatocellular carcinoma tumorigenesis by regulating cell proliferation through the modulation of WWOX signaling
    Title: Upregulation of the putative oncogene COTE1 contributes to human hepatocarcinogenesis through modulation of WWOX signaling.
  5. Overexpression of COTE1 promotes cellular invasion of hepatocellular carcinoma.
    Title: Ectopic overexpression of COTE1 promotes cellular invasion of hepatocellular carcinoma.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables WW domain binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein ENTREP3
Names
family with sequence similarity 189 member B
protein FAM189B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001267608.2 → NP_001254537.1  protein ENTREP3 isoform c

    See identical proteins and their annotated locations for NP_001254537.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an in-frame exon in the 5' coding region, compared to variant 1. It encodes isoform c which is shorter than isoform 1.
    Source sequence(s)
    AF070550, AL713999, BC033707
    Consensus CDS
    CCDS58035.1
    UniProtKB/Swiss-Prot
    P81408
    UniProtKB/TrEMBL
    Q9Y6J7
    Related
    ENSP00000357352.3, ENST00000368368.7
    Conserved Domains (1) summary
    pfam04103
    Location:36 → 177
    CD20; CD20-like family

  2. NM_006589.3 → NP_006580.2  protein ENTREP3 isoform a

    See identical proteins and their annotated locations for NP_006580.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest protein (isoform a).
    Source sequence(s)
    AK093335, BC006493, BC040136
    Consensus CDS
    CCDS1103.1
    UniProtKB/Swiss-Prot
    B1AVS5, P81408, Q8IXL3, Q9BR66
    Related
    ENSP00000354958.2, ENST00000361361.7
    Conserved Domains (1) summary
    pfam04103
    Location:36 → 196
    CD20; CD20-like family

  3. NM_198264.2 → NP_937995.1  protein ENTREP3 isoform b

    See identical proteins and their annotated locations for NP_937995.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame portion of the 5' coding region compared to variant 1. The resulting protein (isoform b) is shorter than isoform a.
    Source sequence(s)
    AK093335, BC040136
    Consensus CDS
    CCDS1104.1
    UniProtKB/Swiss-Prot
    P81408
    Related
    ENSP00000307128.4, ENST00000350210.6
    Conserved Domains (1) summary
    pfam04103
    Location:36 → 101
    CD20; CD20-like family

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    155247205..155255483 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047438744.1 → XP_047294700.1  protein ENTREP3 isoform X2

  2. XM_005244845.3 → XP_005244902.1  protein ENTREP3 isoform X1

    See identical proteins and their annotated locations for XP_005244902.1

    UniProtKB/Swiss-Prot
    P81408
    Conserved Domains (1) summary
    pfam04103
    Location:36 → 196
    CD20; CD20-like family

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315906.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    52228..60506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054329469.1 → XP_054185444.1  protein ENTREP3 isoform X2

  2. XM_054329468.1 → XP_054185443.1  protein ENTREP3 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    154385763..154394041 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054333908.1 → XP_054189883.1  protein ENTREP3 isoform X2

  2. XM_054333907.1 → XP_054189882.1  protein ENTREP3 isoform X1

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P81408.2 GenPept UniProtKB/Swiss-Prot:P81408

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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