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RNU6-61P RNA, U6 small nuclear 61, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480435, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-61Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 61, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:42551
See related
Ensembl:ENSG00000202398 AllianceGenome:HGNC:42551
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RNU6-61
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Genomic context

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Location:
13q31.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (80369426..80369534, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (79597463..79597571, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (80943561..80943669, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5428 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5429 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:80917085-80917883 Neighboring gene uncharacterized LOC105370276 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:80932978-80933742 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:80933743-80934507 Neighboring gene sprouty RTK signaling antagonist 2 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33391 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:81064487-81064988 Neighboring gene Sharpr-MPRA regulatory region 14274 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33432 Neighboring gene uncharacterized LOC124903240 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33463 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043337.1 

    Range
    101..209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    80369426..80369534 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    79597463..79597571 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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