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ADGRD1-AS1 ADGRD1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105755954, updated on 10-Oct-2023

Summary

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Official Symbol
ADGRD1-AS1provided by HGNC
Official Full Name
ADGRD1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53314
See related
AllianceGenome:HGNC:53314
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LACAT8
Expression
Broad expression in lung (RPKM 4.2), placenta (RPKM 2.9) and 19 other tissues See more
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Genomic context

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See ADGRD1-AS1 in Genome Data Viewer
Location:
12q24.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (130990626..130993976, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (131029966..131033314, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (131475171..131478521, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr12:131355651-131356412 and GRCh37_chr12:131356413-131357174 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7349 Neighboring gene Sharpr-MPRA regulatory region 1775 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7350 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7351 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7353 Neighboring gene RAN, member RAS oncogene family Neighboring gene Sharpr-MPRA regulatory region 4789 Neighboring gene uncharacterized LOC124903054 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131464091-131465081 Neighboring gene adhesion G protein-coupled receptor D1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_25923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7354 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr12:131495017-131496216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131512879-131513380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131532400-131532904 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:131542065-131542234 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131555861-131556362 Neighboring gene uncharacterized LOC107984452 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7355 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7356 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7357 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131616699-131617331 Neighboring gene long intergenic non-protein coding RNA 1257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131689145-131689646

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The landscape of long noncoding RNAs in the human transcriptome. Iyer MK, et al. Nat Genet, 2015 Mar. PMID 25599403, Free PMC Article
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • lung adenocarcinoma-associated transcript 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131950.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    DB075441, DB081504

  2. NR_131951.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' region and lacks an internal exon, compared to variant 1.
    Source sequence(s)
    DB075441, DB081504

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    130990626..130993976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    131029966..131033314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases