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LOC105375542 uncharacterized LOC105375542 [ Homo sapiens (human) ]

Gene ID: 105375542, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105375542
Gene description
uncharacterized LOC105375542
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 1.0), bone marrow (RPKM 0.6) and 3 other tissues See more
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Genomic context

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Location:
7q34
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (142935727..142936950, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (144291142..144292365, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily V member 6 Neighboring gene Sharpr-MPRA regulatory region 15349 Neighboring gene MPRA-validated peak6804 silencer Neighboring gene transient receptor potential cation channel subfamily V member 5 Neighboring gene LLLL and CFNLAS motif containing 1 Neighboring gene Kell metallo-endopeptidase (Kell blood group) Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:142654865-142655580 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:142659214-142659409

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    142935727..142936950 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_928065.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187562.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    958794..960017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_951721.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    144291142..144292365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077960.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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