MGAT3-AS1 MGAT3 antisense RNA 1 [Homo sapiens (human)] - Gene

Summary

Official Symbol: MGAT3-AS1provided by HGNC
Official Full Name: MGAT3 antisense RNA 1provided by HGNC
Primary source: HGNC:HGNC:51356
See related: Ensembl:ENSG00000227188 AllianceGenome:HGNC:51356
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Homo sapiens
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as: TapSAKI
Expression: Biased expression in small intestine (RPKM 1.5), duodenum (RPKM 0.8) and 11 other tissues See more
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Genomic context

Location:: 22q13.1

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2023_10	current	GRCh38.p14 (GCF_000001405.40)	22	NC_000022.11 (39475807..39476822, complement)
RS_2023_10	current	T2T-CHM13v2.0 (GCF_009914755.1)	22	NC_060946.1 (39946430..39947445, complement)
105.20220307	previous assembly	GRCh37.p13 (GCF_000001405.25)	22	NC_000022.10 (39871812..39872827, complement)

Chromosome 22 - NC_000022.11 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: HPA RNA-seq normal tissues
Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
BioProject: PRJEB4337
Publication: PMID 24309898
Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Endogenous intronic antisense long non-coding RNA, MGAT3-AS1, and kidney transplantation.
Title: Endogenous intronic antisense long non-coding RNA, MGAT3-AS1, and kidney transplantation.
TapSAKI knockdown increased miR-22 expression, decreased Phosphatase and Tensin Homolog (PTEN), Toll-like Receptor 4 (TLR4) and p-p65 expressions, and inhibited apoptosis protein cleaved-caspase-3 expression, and HK-2 cell apoptosis.
Title: LncRNA TapSAKI promotes inflammation injury in HK-2 cells and urine derived sepsis-induced kidney injury.

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Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

transcript predicting survival in AKI (acute kidney injury)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.