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ANTXRLP1 ANTXR like pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100996567, updated on 10-Oct-2023

Summary

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Official Symbol
ANTXRLP1provided by HGNC
Official Full Name
ANTXR like pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:45004
See related
AllianceGenome:HGNC:45004
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 1.3), appendix (RPKM 1.1) and 8 other tissues See more
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Genomic context

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Location:
10q11.22
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (46219025..46269608, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (47099969..47150538, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (47590261..47640844, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene Neighboring gene uncharacterized LOC124902418 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47599617-47600271 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3325 Neighboring gene adenosylhomocysteinase pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47620679-47621178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47622387-47622887 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47622963-47623464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47637588-47638253 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47643189-47644058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47644059-47644928 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2351 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2352 Neighboring gene uncharacterized LOC105378577 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47669003-47669503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47671191-47671769 Neighboring gene ANTXR like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47676205-47676704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47679859-47680464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:47680465-47681068 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:47685074-47685574

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Other Names

  • anthrax toxin receptor-like pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103827.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL450388, BE775052, BX091290, BX280825, HY092480

  2. NR_103828.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two internal exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AL450388, BE775052, BX091290, HY092480

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    46219025..46269608 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    47099969..47150538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases