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SNX3P1X sorting nexin 3 pseudogene 1 X-linked [ Homo sapiens (human) ]

Gene ID: 100873884, updated on 10-Oct-2023

Summary

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Official Symbol
SNX3P1Xprovided by HGNC
Official Full Name
sorting nexin 3 pseudogene 1 X-linkedprovided by HGNC
Primary source
HGNC:HGNC:41516
See related
Ensembl:ENSG00000230543 AllianceGenome:HGNC:41516
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
Xq21.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (92515326..92515497, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (90965572..90965743, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (91770325..91770496, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene protocadherin 11 X-linked Neighboring gene eukaryotic translation initiation factor 4A1 pseudogene 10 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:91417763-91418440 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chrX:91525883-91526412 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:91715176-91715676 Neighboring gene keratin 18 pseudogene 11 Neighboring gene ReSE screen-validated silencer GRCh37_chrX:91796763-91796972 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:91844408-91845108 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:91845109-91845809 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:91845810-91846510 Neighboring gene ribosomal protein L26 pseudogene 36 Neighboring gene TUSC2 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_032372.1 

    Range
    101..272
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    92515326..92515497 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    90965572..90965743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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