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CFAP100-DT CFAP100 divergent transcript [ Homo sapiens (human) ]

Gene ID: 100506907, updated on 10-Oct-2023

Summary

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Official Symbol
CFAP100-DTprovided by HGNC
Official Full Name
CFAP100 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:49641
See related
Ensembl:ENSG00000249833 AllianceGenome:HGNC:49641
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CCDC37-DT; CCDC37-AS1
Expression
Restricted expression toward testis (RPKM 18.0) See more
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Genomic context

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Location:
3q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (126393032..126394798, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (129125548..129127314, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (126111875..126113641, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene KLF transcription factor 15 Neighboring gene uncharacterized LOC105374088 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126050110-126050714 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126050715-126051318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126060213-126060974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126062507-126063190 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126074793-126075552 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126075553-126076312 Neighboring gene NANOG hESC enhancer GRCh37_chr3:126081217-126081718 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126094973-126095585 Neighboring gene uncharacterized LOC107986044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126108375-126108923 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126116648-126117157 Neighboring gene cilia and flagella associated protein 100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126127425-126127925 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:126136999-126137896 Neighboring gene uncharacterized LOC124906280 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126160086-126160721 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126167171-126168110 Neighboring gene ZXD family zinc finger C Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126186579-126187556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126193081-126193606 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14677 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14678

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • CCDC37 antisense RNA 1 (head to head)
  • CCDC37 divergent transcript

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103787.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BI827527, BX109262
    Related
    ENST00000506660.1

  2. NR_103788.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice junction at the 5' end of the second exon and is shorter compared to variant 1.
    Source sequence(s)
    AW241753, BI827527, BX109262
    Related
    ENST00000652761.1

  3. NR_103789.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon compared to variant 1.
    Source sequence(s)
    BI827527, BX109262, HY225164

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    126393032..126394798 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    129125548..129127314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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