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ECE1-AS1 ECE1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100506801, updated on 10-Oct-2023

Summary

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Official Symbol
ECE1-AS1provided by HGNC
Official Full Name
ECE1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40203
See related
Ensembl:ENSG00000231105 AllianceGenome:HGNC:40203
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See ECE1-AS1 in Genome Data Viewer
Location:
1p36.12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (21293290..21299869)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (21120343..21126922)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (21619783..21626362)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4 gamma 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 325 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 27 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:21544531-21544736 Neighboring gene MPRA-validated peak108 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21562319-21562819 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:21587933-21589132 Neighboring gene uncharacterized LOC124903872 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:21591626-21592452 Neighboring gene Sharpr-MPRA regulatory region 15718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21600579-21601078 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21603224-21604202 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:21604203-21605179 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:21610131-21610992 Neighboring gene endothelin converting enzyme 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21615400-21615961 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 377 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 378 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 326 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:21620661-21621860 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21623064-21623668 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21633717-21634404 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21637234-21637788 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:21641652-21642441 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:21643535-21644352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:21644353-21645170 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:21645989-21646806 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:21648477-21649296 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:21650210-21650770 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:21654133-21654691 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:21655565-21656222 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 328 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21664994-21665936 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 330 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 379 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 380 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 333 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21682211-21682712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:21682713-21683212 Neighboring gene PDE4DIP pseudogene 10 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 11 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038404.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031728
    Related
    ENST00000449034.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    21293290..21299869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    21120343..21126922
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases