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HSPD1P11 heat shock protein family D (Hsp60) member 1 pseudogene 11 [ Homo sapiens (human) ]

Gene ID: 100359396, updated on 10-Oct-2023

Summary

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Official Symbol
HSPD1P11provided by HGNC
Official Full Name
heat shock protein family D (Hsp60) member 1 pseudogene 11provided by HGNC
Primary source
HGNC:HGNC:35142
See related
AllianceGenome:HGNC:35142
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSPD1-11P
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Genomic context

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See HSPD1P11 in Genome Data Viewer
Location:
5q15
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (95769697..95771183)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (96270938..96272424)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (95105401..95106887)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Rieske Fe-S domain containing Neighboring gene spermatogenesis associated 9 Neighboring gene uncharacterized LOC105379090 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:95051904-95052077 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22799 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22800 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16186 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16187 Neighboring gene Rho related BTB domain containing 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22801 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22802 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22803 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22804 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22805 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22807 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:95159178-95159678 Neighboring gene uncharacterized LOC124901029 Neighboring gene glutaredoxin Neighboring gene GGCT pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Initial sequencing and analysis of the human genome. Lander ES, et al. Nature, 2001 Feb 15. PMID 11237011
  2. Finishing the euchromatic sequence of the human genome. International Human Genome Sequencing Consortium. Nature, 2004 Oct 21. PMID 15496913
  3. The DNA sequence and comparative analysis of human chromosome 5. Schmutz J, et al. Nature, 2004 Sep 16. PMID 15372022
  4. Chaperonin genes on the rise: new divergent classes and intense duplication in human and other vertebrate genomes. Mukherjee K, et al. BMC Evol Biol, 2010 Mar 1. PMID 20193073, Free PMC Article
  5. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. Choudhury NR, et al. BMC Biol, 2017 Nov 8. PMID 29117863, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Other Names

  • heat shock 60kDa protein 1 (chaperonin) pseudogene 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016480.3 

    Range
    101..1587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    95769697..95771183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    96270938..96272424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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