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LOC100291628 penta-EF-hand domain containing 1 pseudogene [ Homo sapiens (human) ]

Gene ID: 100291628, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100291628
Gene description
penta-EF-hand domain containing 1 pseudogene
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100291628 in Genome Data Viewer
Location:
1q32.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (204528093..204529707, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (203792490..203794104, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (204497221..204498835, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:204475600-204476516 Neighboring gene Sharpr-MPRA regulatory region 2072 Neighboring gene tRNA-Lys (anticodon TTT) 3-1 Neighboring gene tRNA-Lys (anticodon TTT) 3-2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:204484788-204485987 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:204493521-204494720 Neighboring gene MDM4 regulator of p53 Neighboring gene uncharacterized LOC105371692 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1729 Neighboring gene RNA, 5S ribosomal pseudogene 74 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204541896-204542596 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204547373-204547904 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204568422-204568952 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:204568953-204569483 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204587827-204588686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:204588687-204589545 Neighboring gene leucine rich repeat neuronal 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021307.3 

    Range
    101..1715
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    204528093..204529707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    203792490..203794104 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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