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LINC01432 long intergenic non-protein coding RNA 1432 [ Homo sapiens (human) ]

Gene ID: 100270679, updated on 10-Oct-2023

Summary

Official Symbol
LINC01432provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1432provided by HGNC
Primary source
HGNC:HGNC:50745
See related
Ensembl:ENSG00000234435 AllianceGenome:HGNC:50745
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01432 in Genome Data Viewer
Location:
20p11.22
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (22054090..22074654)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (22111150..22131719)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (22034728..22055292)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 6 pseudogene 1 Neighboring gene ribosomal protein L41 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21789824-21790630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21790631-21791436 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:21917369-21917960 Neighboring gene Xe1 enhancer downstream of PAX1 Neighboring gene PEC7 enhancer downstream of PAX1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr20:21982513-21983712 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21989996-21990496 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:22026257-22026923 Neighboring gene uncharacterized LOC105372560 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:22219376-22219876 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:22219877-22220377 Neighboring gene Sharpr-MPRA regulatory region 10919 Neighboring gene uncharacterized LOC105372561 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:22245080-22246279

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Male-pattern baldness susceptibility locus at 20p11.
EBI GWAS Catalog
Six novel susceptibility Loci for early-onset androgenetic alopecia and their unexpected association with common diseases.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038394.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL157412, BC038192
    Related
    ENST00000449427.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    22054090..22074654
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    22111150..22131719
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)