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TRC-ACA1-1 tRNA-Cys (anticodon ACA) 1-1 [ Homo sapiens (human) ]

Gene ID: 100189508, updated on 10-Oct-2023

Summary

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Official Symbol
TRC-ACA1-1provided by HGNC
Official Full Name
tRNA-Cys (anticodon ACA) 1-1provided by HGNC
Primary source
HGNC:HGNC:35083
See related
AllianceGenome:HGNC:35083
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAC32P
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Genomic context

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Location:
5q33.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (152609036..152609211)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (153141885..153142060)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (151988596..151988771)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82644 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82645 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82651 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82653 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82661 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82666 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82670/82671 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82672 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82684 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_82696 and experimental_82697 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_82718 and experimental_82721/82722 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82727 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82741 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82750 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82746 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82735 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82779 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82809 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_82818 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23469 Neighboring gene NANOG hESC enhancer GRCh37_chr5:151891040-151891644 Neighboring gene neuromedin U receptor 2 Neighboring gene ribosomal protein L36a pseudogene 20 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83006 Neighboring gene NANOG hESC enhancer GRCh37_chr5:152022318-152022903 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:152038685-152039224 Neighboring gene long intergenic non-protein coding RNA 1470 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83100 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83142 Neighboring gene uncharacterized LOC124901117 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83185 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:152147932-152148511 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:152191225-152192424 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83374 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83428 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83450 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:152415832-152416029 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:152455744-152456284 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83469 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83487 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:152685418-152686617 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:152729354-152730121 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:152730122-152730888 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:152731661-152732860 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:152829283-152830143 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:152835859-152836432 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16531 Neighboring gene glutamate ionotropic receptor AMPA type subunit 1 Neighboring gene RNA, 7SL, cytoplasmic 177, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • tRNA-Cys-ACA-1-1
  • transfer RNA cysteine 32 (anticodon ACA) pseudogene
  • transfer RNA-Cys (ACA) 1-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008566.1 

    Range
    101..276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    152609036..152609211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    153141885..153142060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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