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TRQ-TTG5-1 tRNA-Gln (anticodon TTG) 5-1 [ Homo sapiens (human) ]

Gene ID: 100189473, updated on 10-Oct-2023

Summary

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Official Symbol
TRQ-TTG5-1provided by HGNC
Official Full Name
tRNA-Gln (anticodon TTG) 5-1provided by HGNC
Primary source
HGNC:HGNC:35046
See related
AllianceGenome:HGNC:35046
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAQ39P
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Genomic context

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See TRQ-TTG5-1 in Genome Data Viewer
Location:
2p21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (45710302..45710374, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (45715339..45715411, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (45937441..45937513, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102724965 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11439 Neighboring gene Sharpr-MPRA regulatory region 4153 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11440 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:45878872-45879492 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:45899906-45900117 Neighboring gene PRKCE antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15688 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15689 Neighboring gene protein kinase C epsilon Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15691 Neighboring gene NANOG hESC enhancer GRCh37_chr2:45959936-45960443 Neighboring gene Sharpr-MPRA regulatory region 1594 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:46013490-46014689 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15692 Neighboring gene Sharpr-MPRA regulatory region 10855 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:46050503-46051025 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:46051026-46051547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15693 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15694 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:46063209-46063734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15695 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15696 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:46121150-46121322 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11445 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15698 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:46185885-46186435 Neighboring gene uncharacterized LOC124907761 Neighboring gene Sharpr-MPRA regulatory region 2946 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:46190573-46191772 Neighboring gene NANOG hESC enhancer GRCh37_chr2:46200583-46201132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15699 Neighboring gene ribosomal protein L26 pseudogene 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Gln-TTG-5-1
  • transfer RNA glutamine 39 (anticodon UUG) pseudogene
  • transfer RNA-Gln (TTG) 5-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008531.1 

    Range
    101..173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    45710302..45710374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    45715339..45715411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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