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TRSUP-CTA3-1 tRNA suppressor (anticodon CTA) 3-1 [ Homo sapiens (human) ]

Gene ID: 100189470, updated on 10-Oct-2023

Summary

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Official Symbol
TRSUP-CTA3-1provided by HGNC
Official Full Name
tRNA suppressor (anticodon CTA) 3-1provided by HGNC
Primary source
HGNC:HGNC:35043
See related
AllianceGenome:HGNC:35043
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNASUP6P
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Genomic context

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Location:
14q24.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (78234495..78234567, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (72443519..72443591, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (78700838..78700910, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 388 Neighboring gene ribosomal protein S26 pseudogene 48 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:78793548-78794747 Neighboring gene neurexin 3 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36858 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8816 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8817 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36905 Neighboring gene MPRA-validated peak2214 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5982 Neighboring gene Sharpr-MPRA regulatory region 7209 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_36943 Neighboring gene uncharacterized LOC105370589 Neighboring gene MPRA-validated peak2216 silencer Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:79358917-79359500 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:79359501-79360083 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:79400229-79400386 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:79451802-79452322 Neighboring gene uncharacterized LOC124903353

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Sup-CTA-3-1
  • transfer RNA suppressor (CTA) 3-1
  • transfer RNA suppressor 6 (anticodon CUA) pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_008528.1 

    Range
    101..173
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    78234495..78234567 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    72443519..72443591 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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