U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TRX-CAT1-7 tRNA-iMet (anticodon CAT) 1-7 [ Homo sapiens (human) ]

Gene ID: 100189315, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
TRX-CAT1-7provided by HGNC
Official Full Name
tRNA-iMet (anticodon CAT) 1-7provided by HGNC
Primary source
HGNC:HGNC:34882
See related
AllianceGenome:HGNC:34882
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAM17; TRX-CAT1-8
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See TRX-CAT1-7 in Genome Data Viewer
Location:
6p22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (27902493..27902564, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (27772143..27772214, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (27870271..27870342, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24338 Neighboring gene H2B clustered histone 17 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24339 Neighboring gene CRISPRi-validated cis-regulatory element chr6.1313 Neighboring gene RNA, U7 small nuclear 26 pseudogene Neighboring gene CRISPRi-validated cis-regulatory element chr6.1314 Neighboring gene CRISPRi-validated cis-regulatory element chr6.1315 Neighboring gene tRNA-Gly (anticodon GCC) 2-3 Neighboring gene olfactory receptor family 2 subfamily B member 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

Go to the top of the page Help

Other Names

  • tRNA-iMet-CAT-1-7
  • tRNA-iMet-CAT-1-8
  • transfer RNA initiator methionine (CAT) 1-8
  • transfer RNA methionine 17 (anticodon CAU)
  • transfer RNA-iMet (CAT) 1-7
  • transfer RNA-iMet (CAT) 1-8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    27902493..27902564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    27772143..27772214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases