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TRX-CAT1-6 tRNA-iMet (anticodon CAT) 1-6 [ Homo sapiens (human) ]

Gene ID: 100189297, updated on 10-Oct-2023

Summary

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Official Symbol
TRX-CAT1-6provided by HGNC
Official Full Name
tRNA-iMet (anticodon CAT) 1-6provided by HGNC
Primary source
HGNC:HGNC:34863
See related
AllianceGenome:HGNC:34863
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAM15; TRX-CAT1-7
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Genomic context

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Location:
6p22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (27592821..27592892, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (27462466..27462537, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (27560600..27560671, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene tRNA-Asp (anticodon GTC) 3-1 Neighboring gene tRNA-Lys (anticodon TTT) 4-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24295 Neighboring gene Sharpr-MPRA regulatory region 6095 Neighboring gene Sharpr-MPRA regulatory region 11926 Neighboring gene RNA, U6 small nuclear 471, pseudogene Neighboring gene CRISPRi-validated cis-regulatory element chr6.1269 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:27569374-27569874 Neighboring gene tRNA-Leu (anticodon CAA) 3-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-iMet-CAT-1-6
  • tRNA-iMet-CAT-1-7
  • transfer RNA initiator methionine (CAT) 1-7
  • transfer RNA methionine 15 (anticodon CAU)
  • transfer RNA-iMet (CAT) 1-6
  • transfer RNA-iMet (CAT) 1-7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    27592821..27592892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    27462466..27462537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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