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TRA-TGC3-2 tRNA-Ala (anticodon TGC) 3-2 [ Homo sapiens (human) ]

Gene ID: 100189232, updated on 10-Oct-2023

Summary

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Official Symbol
TRA-TGC3-2provided by HGNC
Official Full Name
tRNA-Ala (anticodon TGC) 3-2provided by HGNC
Primary source
HGNC:HGNC:34795
See related
AllianceGenome:HGNC:34795
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAA23; TRA-TGC3-1
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Genomic context

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Location:
12q24.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (124921755..124921826, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (124926963..124927034, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (125406301..125406372, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ubiquitin C Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:125398493-125399450 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5068 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:125400549-125401748 Neighboring gene microRNA 5188 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7311 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5070 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:125405603-125406281 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7314 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:125412388-125413587 Neighboring gene tRNA-Asp (anticodon GTC) 2-9 Neighboring gene tRNA-Phe (anticodon GAA) 1-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ala (TGC) 3-2
  • tRNA-Ala-TGC-3-1
  • transfer RNA alanine 23 (anticodon UGC)
  • transfer RNA-Ala (TGC) 3-1
  • transfer RNA-Ala (TGC) 3-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    124921755..124921826 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    124926963..124927034 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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