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TRX-CAT1-3 tRNA-iMet (anticodon CAT) 1-3 [ Homo sapiens (human) ]

Gene ID: 100189094, updated on 10-Oct-2023

Summary

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Official Symbol
TRX-CAT1-3provided by HGNC
Official Full Name
tRNA-iMet (anticodon CAT) 1-3provided by HGNC
Primary source
HGNC:HGNC:34655
See related
AllianceGenome:HGNC:34655
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAM6; TRX-CAT1-4
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Genomic context

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See TRX-CAT1-3 in Genome Data Viewer
Location:
6p22.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (26313124..26313195, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26181497..26181568, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26313352..26313423, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17006 Neighboring gene tRNA-Gln (anticodon TTG) 3-2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17007 Neighboring gene tRNA-Ser (anticodon TGA) 3-1 Neighboring gene tRNA-Trp (anticodon CCA) 3-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24237 Neighboring gene H3 clustered histone 9, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • tRNA-iMet-CAT-1-3
  • tRNA-iMet-CAT-1-4
  • transfer RNA initiator methionine (CAT) 1-4
  • transfer RNA methionine 6 (anticodon CAU)
  • transfer RNA-iMet (CAT) 1-3
  • transfer RNA-iMet (CAT) 1-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    26313124..26313195 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    26181497..26181568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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