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GOLGA8F golgin A8 family member F [ Homo sapiens (human) ]

Gene ID: 100132565, updated on 3-Apr-2024

Summary

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Official Symbol
GOLGA8Fprovided by HGNC
Official Full Name
golgin A8 family member Fprovided by HGNC
Primary source
HGNC:HGNC:32378
See related
Ensembl:ENSG00000153684 AllianceGenome:HGNC:32378
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be involved in Golgi organization. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 35.6) See more
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Genomic context

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Location:
15q13.1
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (28378638..28392021)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (26121359..26134744)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (28623784..28637167)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene golgin A6 family like 24 Neighboring gene MPHOSPH10 pseudogene 7 Neighboring gene MPRA-validated peak2278 silencer Neighboring gene RNA, 7SL, cytoplasmic 238, pseudogene Neighboring gene ABCB10 pseudogene 3 Neighboring gene microRNA 4509-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genomic analysis of the chromosome 15q11-q13 Prader-Willi syndrome region and characterization of transcripts for GOLGA8E and WHCD1L1 from the proximal breakpoint region. Jiang YH, et al. BMC Genomics, 2008 Jan 28. PMID 18226259, Free PMC Article
  2. Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns. Szafranski K, et al. Genome Biol, 2007. PMID 17672918, Free PMC Article
  3. A comprehensive SARS-CoV-2-human protein-protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets. Zhou Y, et al. Nat Biotechnol, 2023 Jan. PMID 36217030, Free PMC Article
  4. An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders. Chen S, et al. Nat Genet, 2018 Jul. PMID 29892012, Free PMC Article
  5. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. the apparent occurrence of an unusual TG 3' splice site in intron 11 is discussed
    Title: Violating the splicing rules: TG dinucleotides function as alternative 3' splice sites in U2-dependent introns.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • FLJ32679, FLJ59075, FLJ77521, MGC102859, MGC104696, MGC167066, DKFZp434P162

General protein information

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Preferred Names
putative golgin subfamily A member 8F; golgin A8 family member F
Names
golgi autoantigen, golgin subfamily a, 8F
golgin A8 family, member F pseudogene
golgin-like hypothetical protein LOC440321

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001350920.2 → NP_001337849.2  putative golgin subfamily A member 8F

    Status: VALIDATED

    Source sequence(s)
    AC091304
    Consensus CDS
    CCDS86437.2
    UniProtKB/Swiss-Prot
    P0DX52
    UniProtKB/TrEMBL
    A0A0G2JPF6
    Related
    ENSP00000456138.3, ENST00000526619.7
    Conserved Domains (1) summary
    COG1196
    Location:97 → 399
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RNA

  1. NR_033351.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091304
    Related
    ENST00000532622.8

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    28378638..28392021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002957623.2 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    512031..525416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054331731.1 → XP_054187706.1  golgin A8 family member F isoform X5

  2. XM_054331727.1 → XP_054187702.1  golgin A8 family member F isoform X1

  3. XM_054331730.1 → XP_054187705.1  golgin A8 family member F isoform X4

  4. XM_054331729.1 → XP_054187704.1  golgin A8 family member F isoform X3

  5. XM_054331728.1 → XP_054187703.1  golgin A8 family member F isoform X2

  6. XM_054331732.1 → XP_054187707.1  golgin A8 family member F isoform X6

    UniProtKB/TrEMBL
    A0A0G2JP71

  7. XM_054331733.1 → XP_054187708.1  golgin A8 family member F isoform X6

    UniProtKB/TrEMBL
    A0A0G2JP71

RNA

  1. XR_008485730.1 RNA Sequence

  2. XR_008485731.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NW_003315943.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    66561..79946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054329571.1 → XP_054185546.1  golgin A8 family member F isoform X11

  2. XM_054329567.1 → XP_054185542.1  golgin A8 family member F isoform X7

  3. XM_054329570.1 → XP_054185545.1  golgin A8 family member F isoform X10

  4. XM_054329569.1 → XP_054185544.1  golgin A8 family member F isoform X9

  5. XM_054329568.1 → XP_054185543.1  golgin A8 family member F isoform X8

  6. XM_054329572.1 → XP_054185547.1  golgin A8 family member F isoform X12

    UniProtKB/TrEMBL
    A0A0G2JP71

  7. XM_054329573.1 → XP_054185548.1  golgin A8 family member F isoform X12

    UniProtKB/TrEMBL
    A0A0G2JP71

RNA

  1. XR_008485651.1 RNA Sequence

  2. XR_008485652.1 RNA Sequence

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    625817..639202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054329994.1 → XP_054185969.1  golgin A8 family member F isoform X5

  2. XM_054329990.1 → XP_054185965.1  golgin A8 family member F isoform X1

  3. XM_054329993.1 → XP_054185968.1  golgin A8 family member F isoform X4

  4. XM_054329992.1 → XP_054185967.1  golgin A8 family member F isoform X3

  5. XM_054329991.1 → XP_054185966.1  golgin A8 family member F isoform X2

  6. XM_054329995.1 → XP_054185970.1  golgin A8 family member F isoform X6

    UniProtKB/TrEMBL
    A0A0G2JP71

  7. XM_054329996.1 → XP_054185971.1  golgin A8 family member F isoform X6

    UniProtKB/TrEMBL
    A0A0G2JP71

RNA

  1. XR_008485664.1 RNA Sequence

  2. XR_008485665.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    26121359..26134744
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054377162.1 → XP_054233137.1  golgin A8 family member F isoform X19

  2. XM_054377156.1 → XP_054233131.1  golgin A8 family member F isoform X13

  3. XM_054377160.1 → XP_054233135.1  golgin A8 family member F isoform X17

  4. XM_054377158.1 → XP_054233133.1  golgin A8 family member F isoform X15

  5. XM_054377157.1 → XP_054233132.1  golgin A8 family member F isoform X14

  6. XM_054377159.1 → XP_054233134.1  golgin A8 family member F isoform X16

  7. XM_054377161.1 → XP_054233136.1  golgin A8 family member F isoform X18

  8. XM_054377163.1 → XP_054233138.1  golgin A8 family member F isoform X20

    UniProtKB/TrEMBL
    A0A0G2JP71

  9. XM_054377164.1 → XP_054233139.1  golgin A8 family member F isoform X20

    UniProtKB/TrEMBL
    A0A0G2JP71

RNA

  1. XR_008488907.1 RNA Sequence

  2. XR_008488908.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001012452.2: Suppressed sequence

    Description
    NM_001012452.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

  2. NM_001164328.1: Suppressed sequence

    Description
    NM_001164328.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

  3. NR_033352.1: Suppressed sequence

    Description
    NR_033352.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DX52.1 GenPept UniProtKB/Swiss-Prot:P0DX52

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