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HNF4GP1 hepatocyte nuclear factor 4 gamma pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100130462, updated on 10-Oct-2023

Summary

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Official Symbol
HNF4GP1provided by HGNC
Official Full Name
hepatocyte nuclear factor 4 gamma pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:35417
See related
AllianceGenome:HGNC:35417
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q21.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (55996489..56000450, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (55213150..55217111, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (56570623..56574584, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903233 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:55519922-55520785 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:55574112-55574648 Neighboring gene long intergenic non-protein coding RNA 2335 Neighboring gene microRNA 5007 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56010133-56010881 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:56011216-56011793 Neighboring gene Sharpr-MPRA regulatory region 1645 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56150333-56150862 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:56151393-56151922 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56152453-56152982 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:56157753-56158282 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:56177964-56178464 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56228945-56229842 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:56230739-56231635 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:56227375-56228088 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:56234325-56235221 Neighboring gene Sharpr-MPRA regulatory region 559 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56538365-56538865 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56685906-56686739 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56686740-56687572 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56688674-56689498 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:56689499-56690322 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:56740943-56741542 Neighboring gene uncharacterized LOC105370214 Neighboring gene spermatogenesis associated 2 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr13:56970406-56970907 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of nuclear receptor pseudogenes in vertebrates: how the silent tell their stories. Zhang ZD, et al. Mol Biol Evol, 2008 Jan. PMID 18065488

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016594.1 

    Range
    101..4062
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    55996489..56000450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    55213150..55217111 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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