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SDCBPP2 syndecan binding protein pseudogene 2 [ Homo sapiens (human) ]

Gene ID: 100129960, updated on 10-Oct-2023

Summary

Official Symbol
SDCBPP2provided by HGNC
Official Full Name
syndecan binding protein pseudogene 2provided by HGNC
Primary source
HGNC:HGNC:44686
See related
AllianceGenome:HGNC:44686
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
8q13.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (69942809..69944286)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (70372395..70373872)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (70855044..70856521)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 675, pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 270 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:70858967-70859547 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:70869603-70869811 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:70887580-70888508 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:70889439-70890367 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:70891108-70891790 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19266 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:70907101-70907667 Neighboring gene SUMO2 pseudogene 20 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:70919765-70920266 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:70923018-70923212 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27504 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:70973261-70973851 Neighboring gene PR/SET domain 14 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:70982981-70983710

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_030275.2 

    Range
    89..1566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    69942809..69944286
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    70372395..70373872
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    GenBank, FASTA, Sequence Viewer (Graphics)